Os10g0485500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidoglycan-binding LysM domain containing protein.
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Os10g0485500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidoglycan-binding LysM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.32 | 0.196 | 10.9 | 0.435 | 0.39 | 1.28 | -0.315 | -0.372 | -0.103 | 20.4 | 0.5997 | 816 | -- | -- |
| 17.38 | 0.194 | 10.9 | 0.433 | 0.445 | 1.36 | -0.12 | -- | -0.103 | 20.1 | 0.6042 | 815 | -- | -- |
| 17.44 | 0.194 | 10.9 | 0.441 | 0.407 | 1.31 | -- | -0.0127 | -0.109 | 20.1 | 0.54 | 809 | -- | -- |
| 17.42 | 0.194 | 10.9 | 0.435 | 0.451 | 1.37 | -- | -- | -0.106 | 20.1 | 0.5702 | 815 | -- | -- |
| 19.67 | 0.207 | 10.9 | 0.404 | -- | 0.795 | -- | -0.153 | -0.029 | -- | 0.54 | 721 | -- | -- |
| 20.91 | 0.214 | 10.9 | 0.306 | 0.595 | -- | -0.0135 | -- | -0.159 | 5.22 | -- | -- | -- | -- |
| 20.91 | 0.214 | 10.9 | 0.306 | 0.595 | -- | -- | -- | -0.159 | 5.22 | -- | -- | -- | -- |
| 19.02 | 0.203 | 10.9 | 0.369 | -- | 0.773 | -- | -- | -0.103 | -- | 0.6654 | 726 | -- | -- |
| 22 | 0.218 | 10.9 | -- | 0.302 | 1.12 | -- | -- | -0.17 | 21.2 | 1.13 | 825 | -- | -- |
| 39.43 | 0.293 | 10.9 | 0.327 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 23.38 | 0.226 | 10.9 | -- | 0.6 | -- | -- | -- | -0.193 | 5.2 | -- | -- | -- | -- |
| 22.49 | 0.221 | 10.9 | -- | -- | 0.725 | -- | -- | -0.176 | -- | 1.08 | 695 | -- | -- |
| 42.25 | 0.303 | 10.9 | -- | -- | -- | -- | -- | -0.181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 3 | 17.17 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 11 | 17.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 12 | 17.41 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 8 |
| 15 | 17.43 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 27 | 17.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 28 | 17.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 32 | 17.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 12 |
| 37 | 17.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 42 | 17.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 44 | 17.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 67 | 17.65 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 70 | 17.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 8 |
| 77 | 17.69 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 78 | 17.70 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 95 | 17.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 10 |
| 99 | 17.75 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 14 |
| 101 | 17.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 16 |
| 139 | 17.80 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 146 | 17.81 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 15 |
| 152 | 17.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 159 | 17.84 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 225 | 17.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 284 | 17.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 288 | 17.99 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 311 | 18.01 | temperature | 30 | 30 | < th | dose dependent | sin | 15 | NA |
| 323 | 18.02 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 336 | 18.03 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 337 | 18.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 365 | 18.06 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 367 | 18.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 370 | 18.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 10 |
| 377 | 18.07 | temperature | 20 | 90 | > th | dose dependent | sin | 14 | NA |
| 389 | 18.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 432 | 18.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 438 | 18.11 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 459 | 18.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 482 | 18.13 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 6 |
| 483 | 18.13 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 13 |
| 484 | 18.13 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 517 | 18.14 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 552 | 18.15 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 612 | 18.17 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 630 | 18.18 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 655 | 18.19 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 664 | 18.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 667 | 18.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 13 |
| 682 | 18.20 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 2 |
| 692 | 18.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 725 | 18.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 767 | 18.23 | temperature | 10 | 90 | > th | dose dependent | sin | 15 | NA |
| 769 | 18.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 777 | 18.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 784 | 18.24 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 834 | 18.26 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 835 | 18.26 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 2 |
| 843 | 18.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 844 | 18.26 | wind | 7 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 868 | 18.27 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 16 |
| 908 | 18.28 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 911 | 18.28 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 952 | 18.29 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 964 | 18.29 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 985 | 18.30 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 998 | 18.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |