Os06g0729900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidoglycan-binding LysM domain containing protein.
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Os06g0729900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidoglycan-binding LysM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.99 | 0.382 | 10.6 | 0.346 | 2.13 | -0.513 | 0.355 | 0.8 | -0.234 | 6.55 | 20.5 | 231 | -- | -- |
| 68.86 | 0.386 | 10.6 | 0.286 | 2.12 | -0.564 | 0.225 | -- | -0.23 | 6.55 | 20.6 | 271 | -- | -- |
| 66.28 | 0.379 | 10.6 | 0.337 | 2.13 | -0.518 | -- | 0.737 | -0.239 | 6.53 | 20.5 | 231 | -- | -- |
| 68.37 | 0.385 | 10.6 | 0.216 | 2.11 | -0.595 | -- | -- | -0.265 | 6.54 | 20.45 | 238 | -- | -- |
| 200.44 | 0.659 | 10.5 | 0.545 | -- | -1.37 | -- | 0.988 | 0.224 | -- | 26.3 | 396 | -- | -- |
| 80.51 | 0.421 | 10.7 | 0.0304 | 2.18 | -- | 0.128 | -- | -0.382 | 6.41 | -- | -- | -- | -- |
| 80.55 | 0.42 | 10.7 | 0.0319 | 2.18 | -- | -- | -- | -0.382 | 6.4 | -- | -- | -- | -- |
| 198.62 | 0.656 | 10.6 | 0.433 | -- | -1.42 | -- | -- | 0.104 | -- | 26.3 | 395 | -- | -- |
| 69.61 | 0.389 | 10.6 | -- | 2.12 | -0.588 | -- | -- | -0.279 | 6.54 | 20.4 | 240 | -- | -- |
| 326.62 | 0.844 | 10.7 | 0.0882 | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
| 80.58 | 0.42 | 10.7 | -- | 2.18 | -- | -- | -- | -0.386 | 6.4 | -- | -- | -- | -- |
| 204.2 | 0.666 | 10.6 | -- | -- | -1.38 | -- | -- | 0.0157 | -- | 26.22 | 395 | -- | -- |
| 326.83 | 0.844 | 10.7 | -- | -- | -- | -- | -- | -0.346 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 3 | 63.93 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 17 |
| 9 | 64.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 24 | 64.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 34 | 64.68 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 48 | 64.91 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 13 |
| 79 | 65.20 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 81 | 65.20 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 19 |
| 102 | 65.38 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 155 | 65.66 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 22 |
| 183 | 65.77 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 12 |
| 207 | 65.86 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 23 |
| 220 | 65.93 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 13 |
| 320 | 66.36 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 327 | 66.39 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 3 |
| 388 | 66.57 | radiation | 20 | 30 | < th | dose dependent | rect. | 7 | 10 |
| 429 | 66.68 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 10 |
| 458 | 66.75 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 22 |
| 468 | 66.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 482 | 66.82 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 9 |
| 543 | 66.99 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 19 |
| 597 | 67.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 599 | 67.12 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 607 | 67.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 615 | 67.15 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 619 | 67.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 687 | 67.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 716 | 67.34 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 750 | 67.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 766 | 67.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 777 | 67.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 843 | 67.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 902 | 67.64 | temperature | 20 | 270 | > th | dose independent | sin | 13 | NA |
| 968 | 67.74 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |