Os03g0110600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidoglycan-binding LysM domain containing protein.
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Os03g0110600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidoglycan-binding LysM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.29 | 0.309 | 3.21 | 0.185 | 0.0945 | 5.25 | 0.271 | 15.6 | -0.0859 | 8.89 | 9.737 | 10 | -- | -- |
| 59.9 | 0.36 | 3.16 | 0.383 | 0.136 | 3.58 | -0.265 | -- | 0.0278 | 1.58 | 10.18 | 10 | -- | -- |
| 42.42 | 0.303 | 3.19 | 0.215 | 0.0964 | 7.26 | -- | 20.9 | -0.0588 | 8.99 | 10 | 11 | -- | -- |
| 47.21 | 0.32 | 3.16 | 0.0644 | 0.0303 | 1.42 | -- | -- | -0.0838 | 2.68 | 10.02 | 11 | -- | -- |
| 42.91 | 0.305 | 3.2 | 0.239 | -- | 7.32 | -- | 21.1 | -0.0631 | -- | 10 | 10 | -- | -- |
| 48.92 | 0.328 | 3.18 | 0.0528 | 0.0905 | -- | 0.281 | -- | -0.0998 | 9.12 | -- | -- | -- | -- |
| 49.19 | 0.328 | 3.18 | 0.0631 | 0.0891 | -- | -- | -- | -0.0992 | 9.55 | -- | -- | -- | -- |
| 46.1 | 0.316 | 3.18 | 0.101 | -- | 1.21 | -- | -- | -0.0893 | -- | 9.58 | 10 | -- | -- |
| 46.37 | 0.317 | 3.19 | -- | 0.000558 | 1.18 | -- | -- | -0.0965 | 14.8 | 9.6 | 11 | -- | -- |
| 49.66 | 0.329 | 3.19 | 0.0625 | -- | -- | -- | -- | -0.099 | -- | -- | -- | -- | -- |
| 49.29 | 0.328 | 3.18 | -- | 0.0891 | -- | -- | -- | -0.106 | 9.5 | -- | -- | -- | -- |
| 46.37 | 0.317 | 3.19 | -- | -- | 1.18 | -- | -- | -0.0963 | -- | 9.6 | 10 | -- | -- |
| 49.76 | 0.329 | 3.19 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.02 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 1 |
| 2 | 39.03 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 3 | 39.07 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 63 | 39.07 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 123 | 39.13 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 132 | 39.13 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 149 | 39.66 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 150 | 39.70 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 3 |
| 151 | 39.72 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 225 | 40.36 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 18 |
| 241 | 40.47 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 18 |
| 314 | 40.86 | wind | 9 | 10 | > th | dose dependent | sin | 13 | NA |
| 425 | 42.47 | wind | 9 | 90 | > th | dose independent | sin | 14 | NA |
| 458 | 42.81 | wind | 9 | 90 | < th | dose independent | sin | 14 | NA |
| 539 | 43.11 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 1 |
| 756 | 43.76 | radiation | 20 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 895 | 44.05 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 929 | 44.14 | wind | 9 | 10 | < th | dose independent | sin | 14 | NA |