BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0110600 Os03g0110600|J023064G08
         (210 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0110600  Peptidoglycan-binding LysM domain containing p...   397   e-111
Os10g0485500  Peptidoglycan-binding LysM domain containing p...   160   6e-40
Os06g0729900  Peptidoglycan-binding LysM domain containing p...    82   3e-16

>Os03g0110600 Peptidoglycan-binding LysM domain containing protein
          Length = 210

 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/210 (92%), Positives = 195/210 (92%)

Query: 1   MSSCGRYILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPLPGQHTK 60
           MSSCGRYILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPLPGQHTK
Sbjct: 1   MSSCGRYILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPLPGQHTK 60

Query: 61  ARSLSTGFSLVNGEVDDAEKPIRRRQKSDAEFSTREGNSGGVLMKAGPGLALRPKSGSRP 120
           ARSLSTGFSLVNGEVDDAEKPIRRRQKSDAEFSTREGNSGGVLMKAGPGLALRPKSGSRP
Sbjct: 61  ARSLSTGFSLVNGEVDDAEKPIRRRQKSDAEFSTREGNSGGVLMKAGPGLALRPKSGSRP 120

Query: 121 EINNSQQDLVATAVPSYGDGLQAVRKSSSTPEFQDSDNSIASVWLKSKWNLKPDAFTXXX 180
           EINNSQQDLVATAVPSYGDGLQAVRKSSSTPEFQDSDNSIASVWLKSKWNLKPDAFT   
Sbjct: 121 EINNSQQDLVATAVPSYGDGLQAVRKSSSTPEFQDSDNSIASVWLKSKWNLKPDAFTLPL 180

Query: 181 XXXXXXXXXXXXFDTFPKQIAAWRNKAARD 210
                       FDTFPKQIAAWRNKAARD
Sbjct: 181 PILLLDSIPKPIFDTFPKQIAAWRNKAARD 210



>Os10g0485500 Peptidoglycan-binding LysM domain containing protein
          Length = 368

 Score =  160 bits (405), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/166 (57%), Positives = 113/166 (68%), Gaps = 16/166 (9%)

Query: 53  PLPGQHTKARSLSTGFSLVNGEVD---DAEKPIRRRQKSDAEFSTREGN-SGGVLMKAGP 108
           P P QH K RSL+ G SL+NGE +   D+EK IRRRQK+D E   RE N S  VL +AG 
Sbjct: 211 PFPFQHRKTRSLAIGSSLLNGETEENGDSEKLIRRRQKADGELLPREENGSSAVLARAGK 270

Query: 109 GLALRPKSGSRPEINNSQQDLVATAVPSYGDGLQAVRKSSSTPEFQDSD----NSIASVW 164
           GLALRPKSGSR ++N SQQ+L+A A PS+GDGL AVRKSSSTPEFQ+ +    ++ +S+W
Sbjct: 271 GLALRPKSGSRQDLNKSQQNLIALAEPSFGDGLHAVRKSSSTPEFQEPESNSSSTSSSIW 330

Query: 165 LKSKWNLKPDAFTXXXXXXXXXXXXXXXFDTFPKQIAAWRNKAARD 210
             SKW LKPDAFT               FD  PK IAAWRNKAARD
Sbjct: 331 STSKWTLKPDAFT--------LPLPLPLFDNIPKPIAAWRNKAARD 368




 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 66/89 (74%), Gaps = 4/89 (4%)

Query: 1   MSSCGRYILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPLPGQHTK 60
           MSSCG+Y+LHRV + DTLAG+AIKYGVEVAD+KR+NGL+TDLQMFAHKTLRIPLPG+H  
Sbjct: 61  MSSCGQYMLHRVGKLDTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLPGRHPP 120

Query: 61  ARSLSTGFSLVNGEVDDAEKPIRRRQKSD 89
           +     G    + E DD E    RR   D
Sbjct: 121 STYQQNG----SYEGDDRECTPPRRLHDD 145



>Os06g0729900 Peptidoglycan-binding LysM domain containing protein
          Length = 332

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 41/51 (80%)

Query: 7  YILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPLPGQ 57
          Y+ H+V R DTL G+AIKYGVE++D+KR N L TD QMFAHK L IPLPG+
Sbjct: 27 YLEHQVSRMDTLPGLAIKYGVEISDIKRANSLMTDSQMFAHKMLLIPLPGR 77



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,934,931
Number of extensions: 278030
Number of successful extensions: 614
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 4
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)