BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0485100 Os10g0485100|AK063971
(855 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0485100 Protein of unknown function DUF179 family protein 1751 0.0
Os05g0420200 Protein of unknown function DUF179 family protein 80 7e-15
Os01g0886000 Protein of unknown function DUF179 family protein 75 2e-13
>Os10g0485100 Protein of unknown function DUF179 family protein
Length = 855
Score = 1751 bits (4535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/855 (98%), Positives = 846/855 (98%)
Query: 1 LSLKLLREYVQKNYPSHFSTGGLTSGKSRMSSKAVPSLVSTGRSAHTERTRLNDWASKLM 60
LSLKLLREYVQKNYPSHFSTGGLTSGKSRMSSKAVPSLVSTGRSAHTERTRLNDWASKLM
Sbjct: 1 LSLKLLREYVQKNYPSHFSTGGLTSGKSRMSSKAVPSLVSTGRSAHTERTRLNDWASKLM 60
Query: 61 EIGEKMSVMVVNDGESISYRSDSQGSTDNPLYDILTKLIHKTRPAHRSKKTKISFVAKDV 120
EIGEKMSVMVVNDGESISYRSDSQGSTDNPLYDILTKLIHKTRPAHRSKKTKISFVAKDV
Sbjct: 61 EIGEKMSVMVVNDGESISYRSDSQGSTDNPLYDILTKLIHKTRPAHRSKKTKISFVAKDV 120
Query: 121 AIKKLSDDSEVQVVESLSIRDSQLERNEGSCASSDGGNDDYTEDSVHENRATEAEYINDR 180
AIKKLSDDSEVQVVESLSIRDSQLERNEGSCASSDGGNDDYTEDSVHENRATEAEYINDR
Sbjct: 121 AIKKLSDDSEVQVVESLSIRDSQLERNEGSCASSDGGNDDYTEDSVHENRATEAEYINDR 180
Query: 181 QAPIKLEKGPANYCDNNEKHLESSDTEVEEEHKTKASDVSLDLQEDISVDVHSSNAPKNF 240
QAPIKLEKGPANYCDNNEKHLESSDTEVEEEHKTKASDVSLDLQEDISVDVHSSNAPKNF
Sbjct: 181 QAPIKLEKGPANYCDNNEKHLESSDTEVEEEHKTKASDVSLDLQEDISVDVHSSNAPKNF 240
Query: 241 CKINKEDLDCSDTKMEEQEHKTEASDTSADLQEEVSTDVHSSNEVGHILHKHKDEETVRE 300
CKINKEDLDCSDTKMEEQEHKTEASDTSADLQEEVSTDVHSSNEVGHILHKHKDEETVRE
Sbjct: 241 CKINKEDLDCSDTKMEEQEHKTEASDTSADLQEEVSTDVHSSNEVGHILHKHKDEETVRE 300
Query: 301 ALDILEPDGTNVNFNQQKSGSANQQDAVFSVLGQESRRIEDAIYEDNLFILDEGSEESDS 360
ALDILEPDGTNVNFNQQKSGSANQQDAVFSVLGQESRRIEDAIYEDNLFILDEGSEESDS
Sbjct: 301 ALDILEPDGTNVNFNQQKSGSANQQDAVFSVLGQESRRIEDAIYEDNLFILDEGSEESDS 360
Query: 361 KYPVHXXXXXXXXXVGDNTYYTEQETPSIPDEHFAGSLFFSDGGYRLLQTLTGGSRMPSL 420
KYPVH VGDNTYYTEQETPSIPDEHFAGSLFFSDGGYRLLQTLTGGSRMPSL
Sbjct: 361 KYPVHAALSSSSSLVGDNTYYTEQETPSIPDEHFAGSLFFSDGGYRLLQTLTGGSRMPSL 420
Query: 421 VIIDPIQQKHYVFPDEIEFTYPSLANFLDHFMNRSLSPYYRSALSVISSKELLRPPFINR 480
VIIDPIQQKHYVFPDEIEFTYPSLANFLDHFMNRSLSPYYRSALSVISSKELLRPPFINR
Sbjct: 421 VIIDPIQQKHYVFPDEIEFTYPSLANFLDHFMNRSLSPYYRSALSVISSKELLRPPFINR 480
Query: 481 DFHEADSIPQLTTSNFCMLVFGFEGCVSKSELPFSNTENISSAWKKDVLVLFSNSWCGFC 540
DFHEADSIPQLTTSNFCMLVFGFEGCVSKSELPFSNTENISSAWKKDVLVLFSNSWCGFC
Sbjct: 481 DFHEADSIPQLTTSNFCMLVFGFEGCVSKSELPFSNTENISSAWKKDVLVLFSNSWCGFC 540
Query: 541 QRTELVVREVYRSFKNFLSSNSQFLQAQDLQIEEKEEESTMKGFPAIYLIDCTSNECHHL 600
QRTELVVREVYRSFKNFLSSNSQFLQAQDLQIEEKEEESTMKGFPAIYLIDCTSNECHHL
Sbjct: 541 QRTELVVREVYRSFKNFLSSNSQFLQAQDLQIEEKEEESTMKGFPAIYLIDCTSNECHHL 600
Query: 601 LKSVGKEERYPTLLFFPAENKSAISYERGISVSNLFEFLESHASNSPHLLEYKGFLWKKK 660
LKSVGKEERYPTLLFFPAENKSAISYERGISVSNLFEFLESHASNSPHLLEYKGFLWKKK
Sbjct: 601 LKSVGKEERYPTLLFFPAENKSAISYERGISVSNLFEFLESHASNSPHLLEYKGFLWKKK 660
Query: 661 TVVQGDAPQAIQFDNSDKISNDVGSHSPSHSERNEARVLTGSVLTATSKLGSAVPFDNSQ 720
TVVQGDAPQAIQFDNSDKISNDVGSHSPSHSERNEARVLTGSVLTATSKLGSAVPFDNSQ
Sbjct: 661 TVVQGDAPQAIQFDNSDKISNDVGSHSPSHSERNEARVLTGSVLTATSKLGSAVPFDNSQ 720
Query: 721 VLIVSADSREGFHGLIINKRLSWDTFKNLDGSMEPIKHAPLFYGGPVVVQGYYLVSLSRV 780
VLIVSADSREGFHGLIINKRLSWDTFKNLDGSMEPIKHAPLFYGGPVVVQGYYLVSLSRV
Sbjct: 721 VLIVSADSREGFHGLIINKRLSWDTFKNLDGSMEPIKHAPLFYGGPVVVQGYYLVSLSRV 780
Query: 781 AFDGYLQVIPGVYYGNVAATAQVTRRIKSGEQSAENLWFFLGFSNWEYSQLFDELSEGAW 840
AFDGYLQVIPGVYYGNVAATAQVTRRIKSGEQSAENLWFFLGFSNWEYSQLFDELSEGAW
Sbjct: 781 AFDGYLQVIPGVYYGNVAATAQVTRRIKSGEQSAENLWFFLGFSNWEYSQLFDELSEGAW 840
Query: 841 QVSEEPIEHLVWPEN 855
QVSEEPIEHLVWPEN
Sbjct: 841 QVSEEPIEHLVWPEN 855
>Os05g0420200 Protein of unknown function DUF179 family protein
Length = 352
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 13/187 (6%)
Query: 669 QAIQFDNSDKISNDVGSHSPSHS-ERNEARVLT----GSVLTATSKLGSAVPFDNSQVLI 723
Q + D S S P+H + A +T G VL AT L F+ + +L+
Sbjct: 125 QELLVDPSAPAEQKTSSGEPAHQLPQKWAHPITMPEAGCVLVATEVLDDDSIFERTVILL 184
Query: 724 VSADSREGF---HGLIINKRLSWDTFKNLDGSME----PIKHAPLFYGGPVVVQGYYLVS 776
+ SR F G+I+N+ L + KN++ S + P +PLF+GGPV + + + +
Sbjct: 185 LRLGSRGTFDSPFGVILNRPL-YTKIKNVNPSFQDQATPFGDSPLFFGGPVDMSMFLVRA 243
Query: 777 LSRVAFDGYLQVIPGVYYGNVAATAQVTRRIKSGEQSAENLWFFLGFSNWEYSQLFDELS 836
G+ +VIPG+ +G + +KSG +++L FF+G + W+Y QL E+
Sbjct: 244 SDNSRLKGFEEVIPGIRFGFRTDLEKAAVLMKSGAIKSQDLRFFVGHAAWDYEQLLSEIR 303
Query: 837 EGAWQVS 843
G W V+
Sbjct: 304 AGYWAVA 310
>Os01g0886000 Protein of unknown function DUF179 family protein
Length = 354
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 700 TGSVLTATSKLGSAVPFDNSQVLIV---SADSREGFHGLIINKRLSWDTFKNLDGSME-- 754
+G VL A +L F+ + +L++ S D+ +G G+I+N+ L + K+++ S
Sbjct: 163 SGCVLVAAEELDGNGTFERTVILLLRLGSRDAYDGPFGVILNRPL-YTKMKHVNPSFRNQ 221
Query: 755 --PIKHAPLFYGGPVVVQGYYLVSLSRVAFDGYLQVIPGVYYGNVAATAQVTRRIKSGEQ 812
P LF+GGPV + + + + G+ +V PGV +G + + +KSG
Sbjct: 222 ATPFSDCSLFFGGPVDMSIFLMRTTDDRPIKGFEEVSPGVCFGFRTDLEKASALLKSGAV 281
Query: 813 SAENLWFFLGFSNWEYSQLFDELSEGAWQVS 843
E+L F++G+S W+Y QL E+ +G W V+
Sbjct: 282 KPEDLNFYVGYSAWDYDQLLSEIDQGYWHVT 312
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,446,985
Number of extensions: 1190742
Number of successful extensions: 2760
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2754
Number of HSP's successfully gapped: 3
Length of query: 855
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 746
Effective length of database: 11,344,475
Effective search space: 8462978350
Effective search space used: 8462978350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)