BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0476600 Os10g0476600|AK067811
(541 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0476600 Similar to Protein phosphatase 2A 62 kDa B\'\'... 1031 0.0
Os02g0191700 Calcium-binding EF-hand domain containing protein 228 1e-59
Os05g0149800 EF-Hand type domain containing protein 88 1e-17
>Os10g0476600 Similar to Protein phosphatase 2A 62 kDa B\'\' regulatory subunit
(Protein phosphatase 2A 62 kDa B regulatory subunit)
(Protein phosphatase 2A alpha)
Length = 541
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/541 (93%), Positives = 504/541 (93%)
Query: 1 MEVEAARRDAATLDPELLQLPELSPGALRENPALAEALYSQWLALPETSKLVNSLIEDAK 60
MEVEAARRDAATLDPELLQLPELSPGALRENPALAEALYSQWLALPETSKLVNSLIEDAK
Sbjct: 1 MEVEAARRDAATLDPELLQLPELSPGALRENPALAEALYSQWLALPETSKLVNSLIEDAK 60
Query: 61 AGATLNVXXXXXXXXXXXXXXLPSMFPAGSAPPLSPRSTSGSPRVMRRXXXXXXXXXXXX 120
AGATLNV LPSMFPAGSAPPLSPRSTSGSPRVMRR
Sbjct: 61 AGATLNVTGSSASTNAASSGSLPSMFPAGSAPPLSPRSTSGSPRVMRRGSGAGPSSLGSP 120
Query: 121 XKVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSRIDHLFFAGEGLQIQEFRSVTKDICKL 180
KVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSRIDHLFFAGEGLQIQEFRSVTKDICKL
Sbjct: 121 LKVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSRIDHLFFAGEGLQIQEFRSVTKDICKL 180
Query: 181 PSFFSSVLFKKIDAAGSGTVTRDAFVDYWINDNKITMDTASQIFEILRKPDYNYLTQEDF 240
PSFFSSVLFKKIDAAGSGTVTRDAFVDYWINDNKITMDTASQIFEILRKPDYNYLTQEDF
Sbjct: 181 PSFFSSVLFKKIDAAGSGTVTRDAFVDYWINDNKITMDTASQIFEILRKPDYNYLTQEDF 240
Query: 241 KPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIFYSINRAGNGHLTLRELKRGNLIAA 300
KPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIFYSINRAGNGHLTLRELKRGNLIAA
Sbjct: 241 KPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIFYSINRAGNGHLTLRELKRGNLIAA 300
Query: 301 MQQLDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHSLTYRIVDR 360
MQQLDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHSLTYRIVDR
Sbjct: 301 MQQLDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHSLTYRIVDR 360
Query: 361 IFSQVPRKFTSMTEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGILTTTEMQF 420
IFSQVPRKFTSMTEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGILTTTEMQF
Sbjct: 361 IFSQVPRKFTSMTEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGILTTTEMQF 420
Query: 421 FYEEQLHRMECMAQEPVLFEDILCQMIDMIGPENECYFTLRDLKRCKLSGXXXXXXXXXX 480
FYEEQLHRMECMAQEPVLFEDILCQMIDMIGPENECYFTLRDLKRCKLSG
Sbjct: 421 FYEEQLHRMECMAQEPVLFEDILCQMIDMIGPENECYFTLRDLKRCKLSGNIFNILFNLN 480
Query: 481 KFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDGEDASNGSGDVWDESLEAP 540
KFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDGEDASNGSGDVWDESLEAP
Sbjct: 481 KFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDGEDASNGSGDVWDESLEAP 540
Query: 541 F 541
F
Sbjct: 541 F 541
>Os02g0191700 Calcium-binding EF-hand domain containing protein
Length = 136
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/136 (77%), Positives = 117/136 (86%)
Query: 406 DLDGNGILTTTEMQFFYEEQLHRMECMAQEPVLFEDILCQMIDMIGPENECYFTLRDLKR 465
D+DGNGILT E+QFF+EEQLHRMECMAQEPVLFEDILCQ+IDMIGPENE +FTL+D +R
Sbjct: 1 DVDGNGILTHNELQFFFEEQLHRMECMAQEPVLFEDILCQLIDMIGPENETFFTLKDFRR 60
Query: 466 CKLSGXXXXXXXXXXKFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDGEDA 525
CKLSG KFMAFE RDPFLIRQ RE P+LT+WDRFA REYIRL+MEEDGEDA
Sbjct: 61 CKLSGHFFNILFNLNKFMAFEARDPFLIRQMREEPSLTDWDRFARREYIRLAMEEDGEDA 120
Query: 526 SNGSGDVWDESLEAPF 541
SN SGDVWDESLE+PF
Sbjct: 121 SNASGDVWDESLESPF 136
>Os05g0149800 EF-Hand type domain containing protein
Length = 488
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 133/318 (41%), Gaps = 13/318 (4%)
Query: 179 KLPSFFSSVLFKKIDAAGSGTVTRDAFVDYWINDNKITMDTASQIFEILRKPDYNYLTQE 238
K FFS F K + SG + F Y + +++ A L + +L
Sbjct: 162 KCKRFFSPSNFMKFEKDDSGRIAILPFYLYVMR--TVSLTQARIDMSELDEDSDGFLQPH 219
Query: 239 DFKPVLKELLATHPGLEFLQGTPE-FQERYAETVIYRIFYSINRAGNGHLTLRELKRGNL 297
+ + ++ L+ P L L+ P F + Y + F+ + G ++++ N
Sbjct: 220 EMEAYIRGLI---PNLAQLRDMPSAFVQMYCRIAARKFFFFCDPHRRGKACIKKVLLSNC 276
Query: 298 IAAMQQLDEEE-----DINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHS 352
+ + +L +E D + +FS I F LD D + + K+ L Y + +
Sbjct: 277 LQELMELHQESEEEVTDTEQAENWFSLTSAQRICDMFLALDKDTNGTLSKQELKEYADGT 336
Query: 353 LTYRIVDRIFSQVPR--KFTSMTEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGN 410
LT ++R+F + R K +M +E F+ F+L+ E+K + L Y F+C+DL+G
Sbjct: 337 LTDIFIERVFDEHVRRSKVGGGNSREMDFESFLDFVLALENKDTPEGLTYLFRCLDLNGR 396
Query: 411 GILTTTEMQFFYEEQLHRMECMAQEPVLFEDILCQMIDMIGPENECYFTLRDLKRCKLSG 470
G LTT ++ + + + + ED+ ++ DM+ P + L DL CK G
Sbjct: 397 GFLTTADIHTLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRIALTDLLSCKQGG 456
Query: 471 XXXXXXXXXXKFMAFETR 488
F A + R
Sbjct: 457 TIASMLIDVRGFWAHDNR 474
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,493,607
Number of extensions: 701905
Number of successful extensions: 1931
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1928
Number of HSP's successfully gapped: 3
Length of query: 541
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 435
Effective length of database: 11,501,117
Effective search space: 5002985895
Effective search space used: 5002985895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)