Os02g0191700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calcium-binding EF-hand domain containing protein.
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Os02g0191700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calcium-binding EF-hand domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.92 | 0.285 | 10.8 | -0.44 | 0.438 | -0.956 | -0.135 | 0.643 | 0.0829 | 23.7 | 21.32 | 621 | -- | -- |
| 37.18 | 0.284 | 10.8 | -0.396 | 0.434 | -1.13 | -0.235 | -- | 0.0933 | 23.8 | 21.3 | 543 | -- | -- |
| 36.98 | 0.283 | 10.8 | -0.442 | 0.438 | -0.946 | -- | 0.71 | 0.0813 | 23.7 | 21.4 | 606 | -- | -- |
| 37.44 | 0.285 | 10.8 | -0.387 | 0.442 | -1.13 | -- | -- | 0.0893 | 23.8 | 21.33 | 557 | -- | -- |
| 48.17 | 0.323 | 10.8 | -0.462 | -- | -1.01 | -- | 0.799 | 0.0569 | -- | 22.4 | 777 | -- | -- |
| 48.54 | 0.327 | 10.8 | -0.144 | 0.507 | -- | -0.277 | -- | 0.212 | 23.5 | -- | -- | -- | -- |
| 48.88 | 0.327 | 10.8 | -0.133 | 0.508 | -- | -- | -- | 0.213 | 23.4 | -- | -- | -- | -- |
| 48.19 | 0.323 | 10.8 | -0.436 | -- | -1.19 | -- | -- | 0.0468 | -- | 22.4 | 793 | -- | -- |
| 40.88 | 0.298 | 10.8 | -- | 0.456 | -0.927 | -- | -- | 0.152 | 23.7 | 21.36 | 530 | -- | -- |
| 65.08 | 0.377 | 10.8 | -0.12 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 49.34 | 0.329 | 10.8 | -- | 0.507 | -- | -- | -- | 0.228 | 23.4 | -- | -- | -- | -- |
| 52.38 | 0.337 | 10.8 | -- | -- | -0.965 | -- | -- | 0.119 | -- | 22.5 | 770 | -- | -- |
| 65.46 | 0.378 | 10.8 | -- | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 3 | 36.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 4 | 36.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 5 | 36.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 6 | 36.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 18 | 37.50 | temperature | 20 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 23 | 37.55 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 47 | 37.74 | temperature | 20 | 720 | < th | dose dependent | sin | 12 | NA |
| 87 | 37.90 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 90 | 37.90 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 97 | 37.92 | temperature | 20 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 101 | 37.94 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 129 | 38.02 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 136 | 38.05 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 153 | 38.08 | temperature | 20 | 1440 | < th | dose dependent | sin | 5 | NA |
| 157 | 38.09 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 20 |
| 176 | 38.13 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 22 |
| 183 | 38.15 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 207 | 38.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 210 | 38.20 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 211 | 38.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 276 | 38.35 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 22 |
| 309 | 38.42 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 328 | 38.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 344 | 38.48 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 345 | 38.48 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 346 | 38.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 359 | 38.49 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 23 |
| 388 | 38.53 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 421 | 38.58 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 23 |
| 447 | 38.61 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 503 | 38.69 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 505 | 38.69 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 612 | 38.85 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 621 | 38.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 638 | 38.90 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 642 | 38.90 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 643 | 38.90 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 723 | 39.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 769 | 39.10 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 776 | 39.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 901 | 39.30 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 921 | 39.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 946 | 39.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 956 | 39.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 997 | 39.40 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |