BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0191700 Os02g0191700|009-138-C10
(136 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G28900.1 | chr5:10925852-10929892 FORWARD LENGTH=537 223 2e-59
AT5G28850.2 | chr5:10877360-10881278 REVERSE LENGTH=537 222 4e-59
AT5G44090.1 | chr5:17743264-17747909 REVERSE LENGTH=539 216 2e-57
AT1G54450.1 | chr1:20336570-20339535 REVERSE LENGTH=536 212 5e-56
AT1G03960.1 | chr1:1014085-1017472 FORWARD LENGTH=530 212 5e-56
>AT5G28900.1 | chr5:10925852-10929892 FORWARD LENGTH=537
Length = 536
Score = 223 bits (569), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 DVDGNGILTHNELQFFFEEQLHRMECMAQEPVLFEDILCQLIDMIGPENETFFTLKDFRR 60
D+D NGI+T NE+QFF+EEQLHRMECMAQE VLFEDILCQ+IDMIGPENE+ TL D +
Sbjct: 400 DLDANGIITRNEMQFFYEEQLHRMECMAQEAVLFEDILCQMIDMIGPENESHITLHDLKG 459
Query: 61 CKLSGHFFNILFNLNKFMAFEARDPFLIRQMREEPSLTDWDRFARREYIRLAMEEDGEDA 120
KLSG+ FNILFNLNKFMAFE RDPFLIRQ RE P+LTDWDRFA REYIRL+MEED EDA
Sbjct: 460 SKLSGNVFNILFNLNKFMAFETRDPFLIRQERENPTLTDWDRFAHREYIRLSMEEDVEDA 519
Query: 121 SNASGDVWDE-SLESPF 136
SN S +VWDE SLE+PF
Sbjct: 520 SNGSAEVWDESSLEAPF 536
>AT5G28850.2 | chr5:10877360-10881278 REVERSE LENGTH=537
Length = 536
Score = 222 bits (566), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/137 (77%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 DVDGNGILTHNELQFFFEEQLHRMECMAQEPVLFEDILCQLIDMIGPENETFFTLKDFRR 60
D+D NGI+T NE+QFF+EEQLHRMECMAQE VLFEDILCQ+IDMIGPENE+ TL D +
Sbjct: 400 DLDANGIITRNEMQFFYEEQLHRMECMAQEAVLFEDILCQMIDMIGPENESHITLHDLKG 459
Query: 61 CKLSGHFFNILFNLNKFMAFEARDPFLIRQMREEPSLTDWDRFARREYIRLAMEEDGEDA 120
KLSG+ FNILFNLNKFMAFE RDPFLIRQ RE P+LTDWDRFA REYIRL+MEED EDA
Sbjct: 460 SKLSGNVFNILFNLNKFMAFETRDPFLIRQERENPTLTDWDRFAHREYIRLSMEEDVEDA 519
Query: 121 SNASGDVWDE-SLESPF 136
SN S +VWD+ SLE+PF
Sbjct: 520 SNGSAEVWDDSSLEAPF 536
>AT5G44090.1 | chr5:17743264-17747909 REVERSE LENGTH=539
Length = 538
Score = 216 bits (551), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 99/136 (72%), Positives = 116/136 (85%)
Query: 1 DVDGNGILTHNELQFFFEEQLHRMECMAQEPVLFEDILCQLIDMIGPENETFFTLKDFRR 60
D+DG+G++T NE+QFF+EEQLHRMEC+ QEPVLFEDILCQ+ DMI PE E TL+D +
Sbjct: 403 DLDGDGVITPNEMQFFYEEQLHRMECITQEPVLFEDILCQIFDMIKPEKENCITLQDLKA 462
Query: 61 CKLSGHFFNILFNLNKFMAFEARDPFLIRQMREEPSLTDWDRFARREYIRLAMEEDGEDA 120
KLSG+ FNILFNLNKFMAFE RDPFLIRQ RE P+LT+WDRFA+REY+RL+MEED E+
Sbjct: 463 SKLSGNIFNILFNLNKFMAFETRDPFLIRQERENPTLTEWDRFAQREYVRLSMEEDVEEV 522
Query: 121 SNASGDVWDESLESPF 136
SN S DVWDE LESPF
Sbjct: 523 SNGSADVWDEPLESPF 538
>AT1G54450.1 | chr1:20336570-20339535 REVERSE LENGTH=536
Length = 535
Score = 212 bits (540), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 100/136 (73%), Positives = 112/136 (82%)
Query: 1 DVDGNGILTHNELQFFFEEQLHRMECMAQEPVLFEDILCQLIDMIGPENETFFTLKDFRR 60
D+D NG+LT NELQFF+EEQLHRMECMAQE VLFEDILCQL DM+ PE+E F L D +
Sbjct: 400 DLDANGVLTRNELQFFYEEQLHRMECMAQEAVLFEDILCQLFDMVKPEDEGFICLNDLKG 459
Query: 61 CKLSGHFFNILFNLNKFMAFEARDPFLIRQMREEPSLTDWDRFARREYIRLAMEEDGEDA 120
KLSG+ FNILFNLNKFMAFE RDPFLIRQ R P+ T+WDRFA REYIRL+MEED EDA
Sbjct: 460 SKLSGNVFNILFNLNKFMAFETRDPFLIRQERANPTWTEWDRFAHREYIRLSMEEDVEDA 519
Query: 121 SNASGDVWDESLESPF 136
SN S + WD+SLE PF
Sbjct: 520 SNGSAEAWDDSLEVPF 535
>AT1G03960.1 | chr1:1014085-1017472 FORWARD LENGTH=530
Length = 529
Score = 212 bits (539), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 98/136 (72%), Positives = 114/136 (83%)
Query: 1 DVDGNGILTHNELQFFFEEQLHRMECMAQEPVLFEDILCQLIDMIGPENETFFTLKDFRR 60
D+DGNG++T NE+QFFFEEQLHRMEC+ QE VLF DILCQ+IDMIGPE E TL+D +
Sbjct: 394 DLDGNGVITSNEMQFFFEEQLHRMECITQEAVLFSDILCQIIDMIGPEKENCITLQDLKG 453
Query: 61 CKLSGHFFNILFNLNKFMAFEARDPFLIRQMREEPSLTDWDRFARREYIRLAMEEDGEDA 120
KLS + FNILFNLNKFMAFE RDPFLIRQ RE+P+LT+WDRFA+REY RL+MEED ++
Sbjct: 454 SKLSANVFNILFNLNKFMAFETRDPFLIRQEREDPNLTEWDRFAQREYARLSMEEDVDEV 513
Query: 121 SNASGDVWDESLESPF 136
SN S DVWDE LE PF
Sbjct: 514 SNGSADVWDEPLEPPF 529
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,177,701
Number of extensions: 126099
Number of successful extensions: 398
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 5
Length of query: 136
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 48
Effective length of database: 8,693,961
Effective search space: 417310128
Effective search space used: 417310128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)