Os10g0476600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein phosphatase 2A alpha).
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Os10g0476600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein phosphatase 2A alpha).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.46 | 0.218 | 11.4 | 0.618 | 0.226 | -0.203 | -0.746 | -1.02 | 0.105 | 6.9 | 24.73 | 1639 | -- | -- |
| 22.81 | 0.222 | 11.5 | 0.334 | 0.187 | -0.242 | -0.693 | -- | 0.0273 | 6.62 | 24.7 | 1462 | -- | -- |
| 22.73 | 0.222 | 11.4 | 0.656 | 0.237 | -0.192 | -- | -1.23 | 0.13 | 7.6 | 25 | 1789 | -- | -- |
| 23.66 | 0.227 | 11.5 | 0.324 | 0.201 | -0.304 | -- | -- | 0.0358 | 8.06 | 24.7 | 3062 | -- | -- |
| 25.4 | 0.235 | 11.4 | 0.589 | -- | -0.213 | -- | -0.944 | 0.0999 | -- | 24.7 | 1461 | -- | -- |
| 24.68 | 0.233 | 11.4 | 0.402 | 0.221 | -- | -0.767 | -- | 0.0972 | 6.88 | -- | -- | -- | -- |
| 26.06 | 0.239 | 11.4 | 0.39 | 0.221 | -- | -- | -- | 0.1 | 7.71 | -- | -- | -- | -- |
| 26.05 | 0.238 | 11.5 | 0.281 | -- | -0.319 | -- | -- | 0.00999 | -- | 24.69 | 2933 | -- | -- |
| 25.45 | 0.235 | 11.5 | -- | 0.193 | -0.374 | -- | -- | -0.00508 | 7.64 | 24.8 | 3062 | -- | -- |
| 28.7 | 0.25 | 11.5 | 0.393 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 30.08 | 0.257 | 11.5 | -- | 0.224 | -- | -- | -- | 0.0566 | 7.59 | -- | -- | -- | -- |
| 27.8 | 0.246 | 11.5 | -- | -- | -0.405 | -- | -- | -0.0467 | -- | 24.43 | 2967 | -- | -- |
| 32.78 | 0.267 | 11.5 | -- | -- | -- | -- | -- | 0.0597 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.76 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 2 | 20.81 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 7 | 20.92 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 9 | 20.94 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 10 | 20.95 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 23 | 21.03 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 26 | 21.04 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 33 | 21.08 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 50 | 21.16 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 52 | 21.16 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 57 | 21.20 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 60 | 21.20 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 70 | 21.25 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 87 | 21.27 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 88 | 21.27 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 89 | 21.28 | temperature | 20.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 95 | 21.28 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 101 | 21.31 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 104 | 21.31 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 110 | 21.32 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 136 | 21.36 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 142 | 21.37 | temperature | 20.0 | 4320 | < th | dose independent | sin | 18 | NA |
| 160 | 21.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 170 | 21.41 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 175 | 21.42 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 176 | 21.42 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 184 | 21.43 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 205 | 21.46 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 19 |
| 227 | 21.48 | temperature | 25.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 238 | 21.48 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 20 |
| 254 | 21.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 262 | 21.51 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 276 | 21.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 287 | 21.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 305 | 21.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 343 | 21.57 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 348 | 21.58 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 359 | 21.58 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 378 | 21.59 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 392 | 21.60 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 23 | 15 |
| 405 | 21.61 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 427 | 21.62 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 512 | 21.64 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 526 | 21.65 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 536 | 21.65 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 548 | 21.66 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 563 | 21.66 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 569 | 21.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 595 | 21.67 | temperature | 25.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 613 | 21.68 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 628 | 21.68 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 631 | 21.69 | temperature | 25.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 633 | 21.69 | temperature | 25.0 | 1440 | < th | dose independent | no | NA | NA |
| 635 | 21.69 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 661 | 21.69 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 665 | 21.69 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 669 | 21.69 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 702 | 21.70 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 781 | 21.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 808 | 21.73 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 811 | 21.73 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 834 | 21.74 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 840 | 21.74 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 883 | 21.75 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 938 | 21.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 12 |
| 978 | 21.76 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 991 | 21.76 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 9 |