BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0460900 Os10g0460900|003-128-B05
         (37 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0461100  Similar to Keratin, type II cytoskeletal 1 (Cy...    78   2e-15
Os08g0347400  Protein prenyltransferase domain containing pr...    78   2e-15
Os10g0460900  Tetratricopeptide-like helical domain containi...    77   3e-15

>Os10g0461100 Similar to Keratin, type II cytoskeletal 1 (Cytokeratin 1) (K1) (CK
           1) (67 kDa cytokeratin) (Hair alpha protein)
          Length = 537

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1   EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI 37
           EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI
Sbjct: 240 EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI 276



>Os08g0347400 Protein prenyltransferase domain containing protein
          Length = 129

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1   EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI 37
           EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI
Sbjct: 70  EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI 106



>Os10g0460900 Tetratricopeptide-like helical domain containing protein
          Length = 37

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1  EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI 37
          EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI
Sbjct: 1  EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI 37



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 993,615
Number of extensions: 16144
Number of successful extensions: 37
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 3
Length of query: 37
Length of database: 17,035,801
Length adjustment: 11
Effective length of query: 26
Effective length of database: 16,461,447
Effective search space: 427997622
Effective search space used: 427997622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)