Os08g0347400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0347400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.93 | 0.412 | 10.6 | 0.624 | 1.66 | 1.19 | -0.24 | -0.747 | -0.337 | 21.9 | 19.16 | 5287 | -- | -- |
| 76.6 | 0.408 | 10.6 | 0.631 | 1.67 | 1.6 | -0.292 | -- | -0.352 | 21.9 | 18.59 | 6490 | -- | -- |
| 77.1 | 0.409 | 10.6 | 0.622 | 1.66 | 1.3 | -- | -0.598 | -0.342 | 21.9 | 18.8 | 5318 | -- | -- |
| 76.87 | 0.408 | 10.6 | 0.648 | 1.67 | 1.6 | -- | -- | -0.339 | 21.8 | 18.7 | 6380 | -- | -- |
| 240.93 | 0.723 | 10.5 | 0.643 | -- | 1.34 | -- | -0.17 | -0.335 | -- | 19.01 | 4443 | -- | -- |
| 94.14 | 0.455 | 10.6 | 0.0451 | 1.65 | -- | -0.213 | -- | -0.526 | 21.8 | -- | -- | -- | -- |
| 94.31 | 0.455 | 10.6 | 0.0532 | 1.65 | -- | -- | -- | -0.526 | 21.8 | -- | -- | -- | -- |
| 240.11 | 0.722 | 10.5 | 0.668 | -- | 1.58 | -- | -- | -0.343 | -- | 18.8 | 5880 | -- | -- |
| 84.01 | 0.427 | 10.6 | -- | 1.69 | 1.23 | -- | -- | -0.427 | 21.7 | 17.8 | 6158 | -- | -- |
| 257.81 | 0.75 | 10.6 | 0.0702 | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
| 94.39 | 0.454 | 10.6 | -- | 1.65 | -- | -- | -- | -0.532 | 21.8 | -- | -- | -- | -- |
| 246.89 | 0.734 | 10.6 | -- | -- | 1.53 | -- | -- | -0.5 | -- | 18.8 | 5880 | -- | -- |
| 257.94 | 0.75 | 10.6 | -- | -- | -- | -- | -- | -0.534 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 4 | 73.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 17 | 74.57 | radiation | 1 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 20 | 74.73 | radiation | 20 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 21 | 74.80 | radiation | 20 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 27 | 74.94 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 37 | 75.27 | radiation | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 38 | 75.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 58 | 75.63 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 61 | 75.66 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 63 | 75.67 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 71 | 75.78 | wind | 7 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 86 | 76.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 95 | 76.07 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 96 | 76.07 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 109 | 76.10 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 115 | 76.15 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 116 | 76.17 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 118 | 76.22 | radiation | 30 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 120 | 76.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 132 | 76.35 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 19 |
| 136 | 76.38 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 145 | 76.43 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 149 | 76.46 | wind | 7 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 153 | 76.47 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 180 | 76.50 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 182 | 76.52 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 191 | 76.57 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 195 | 76.61 | humidity | 70 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 214 | 76.69 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 215 | 76.69 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 222 | 76.72 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 236 | 76.77 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 239 | 76.78 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 241 | 76.78 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 251 | 76.81 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 264 | 76.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 291 | 76.87 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 294 | 76.88 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 312 | 76.90 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 324 | 76.91 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 332 | 76.92 | humidity | 50 | 43200 | < th | dose dependent | sin | 6 | NA |
| 348 | 76.94 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 369 | 76.96 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 400 | 76.98 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 409 | 76.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 6 |
| 418 | 76.99 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 432 | 77.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 8 | 12 |
| 459 | 77.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 475 | 77.04 | temperature | 10 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 484 | 77.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 499 | 77.06 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 17 |
| 507 | 77.07 | wind | 3 | 43200 | < th | dose dependent | rect. | 15 | 9 |
| 521 | 77.08 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 557 | 77.10 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 582 | 77.12 | temperature | 10 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 583 | 77.12 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 594 | 77.12 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 624 | 77.13 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 626 | 77.13 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 669 | 77.13 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 682 | 77.14 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 685 | 77.15 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 723 | 77.18 | humidity | 50 | 43200 | > th | dose independent | sin | 10 | NA |
| 724 | 77.18 | humidity | 50 | 43200 | < th | dose independent | sin | 9 | NA |
| 728 | 77.18 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 791 | 77.22 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 837 | 77.25 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 18 |
| 838 | 77.25 | temperature | 20 | 4320 | < th | dose dependent | sin | 15 | NA |
| 879 | 77.27 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 8 |
| 900 | 77.28 | wind | 3 | 43200 | < th | dose dependent | rect. | 12 | 12 |
| 905 | 77.29 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 934 | 77.30 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 961 | 77.32 | humidity | 50 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 971 | 77.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 984 | 77.34 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 988 | 77.34 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 7 |