BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0347400 Os08g0347400|Os08g0347400
(129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0347400 Protein prenyltransferase domain containing pr... 218 8e-58
Os10g0461100 Similar to Keratin, type II cytoskeletal 1 (Cy... 196 4e-51
Os10g0460900 Tetratricopeptide-like helical domain containi... 78 2e-15
>Os08g0347400 Protein prenyltransferase domain containing protein
Length = 129
Score = 218 bits (556), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 111/129 (86%), Positives = 111/129 (86%)
Query: 1 MAWLSFAQTAQASEGTNLNMVYEVGELFEXXXXXXXXXXXXXXXXXXTFFVIRQVLVRRE 60
MAWLSFAQTAQASEGTNLNMVYEVGELFE TFFVIRQVLVRRE
Sbjct: 1 MAWLSFAQTAQASEGTNLNMVYEVGELFELGIQLSYLLILLGLLGAGTFFVIRQVLVRRE 60
Query: 61 LDLSAKDLQEQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAIQKWDRDEQDLAQVR 120
LDLSAKDLQEQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAIQKWDRDEQDLAQVR
Sbjct: 61 LDLSAKDLQEQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAIQKWDRDEQDLAQVR 120
Query: 121 YPQLLGTIS 129
YPQLLGTIS
Sbjct: 121 YPQLLGTIS 129
>Os10g0461100 Similar to Keratin, type II cytoskeletal 1 (Cytokeratin 1) (K1) (CK
1) (67 kDa cytokeratin) (Hair alpha protein)
Length = 537
Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/119 (82%), Positives = 101/119 (84%)
Query: 1 MAWLSFAQTAQASEGTNLNMVYEVGELFEXXXXXXXXXXXXXXXXXXTFFVIRQVLVRRE 60
MAWLSFAQTAQASEGTN+NMVYEVGELFE TFFVIRQVLVRRE
Sbjct: 171 MAWLSFAQTAQASEGTNINMVYEVGELFELGIQLSYLLILLGLLGAGTFFVIRQVLVRRE 230
Query: 61 LDLSAKDLQEQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAIQKWDRDEQDLAQV 119
LDLSAK+LQEQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAIQKWDRDEQDLAQ+
Sbjct: 231 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAIQKWDRDEQDLAQM 289
>Os10g0460900 Tetratricopeptide-like helical domain containing protein
Length = 37
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/37 (100%), Positives = 37/37 (100%)
Query: 70 EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI 106
EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI
Sbjct: 1 EQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAI 37
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,058,690
Number of extensions: 80204
Number of successful extensions: 245
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 3
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)