BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0456400 Os10g0456400|AK101916
(639 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0456400 Conserved hypothetical protein 1098 0.0
Os07g0633600 Conserved hypothetical protein 422 e-118
Os01g0805100 Conserved hypothetical protein 226 4e-59
Os03g0335700 174 2e-43
>Os10g0456400 Conserved hypothetical protein
Length = 639
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/639 (85%), Positives = 544/639 (85%)
Query: 1 MLGRAGALSAARWRXXXXXXXXXXXDLRAALRSGGNXXXXXXXXXXXXXXXXXXXHSPDD 60
MLGRAGALSAARWR DLRAALRSGGN HSPDD
Sbjct: 1 MLGRAGALSAARWRGGAGTGTGIGIDLRAALRSGGNLLFALFVAAVLAFTLLAAVHSPDD 60
Query: 61 PLLHPSSHQLTAFLTSATSNSTFLADDSVLRTGEDFXXXXXXXXXXXXXXXXXXXXXXXV 120
PLLHPSSHQLTAFLTSATSNSTFLADDSVLRTGEDF V
Sbjct: 61 PLLHPSSHQLTAFLTSATSNSTFLADDSVLRTGEDFAAAIGANSSDAAAAAEATVVAEAV 120
Query: 121 PFIKLEDVATKEESSGAERAVTVDTXXXXXXXXXXXXNPIVEAVSCDTEAPVDCTGDKDL 180
PFIKLEDVATKEESSGAERAVTVDT NPIVEAVSCDTEAPVDCTGDKDL
Sbjct: 121 PFIKLEDVATKEESSGAERAVTVDTDASSDAGAAAEENPIVEAVSCDTEAPVDCTGDKDL 180
Query: 181 FNLLMRTAIEKFSDLHFYRFGRPVAVPGSPMECDLAWRFRPAEDTNGRTTYYKDYRRFTL 240
FNLLMRTAIEKFSDLHFYRFGRPVAVPGSPMECDLAWRFRPAEDTNGRTTYYKDYRRFTL
Sbjct: 181 FNLLMRTAIEKFSDLHFYRFGRPVAVPGSPMECDLAWRFRPAEDTNGRTTYYKDYRRFTL 240
Query: 241 TRDVNTCNLVVGNVGEYHSGTGAXXXXXXXXXXXXXXXXEAPVTDFVPAKTQMRLXXXXX 300
TRDVNTCNLVVGNVGEYHSGTGA EAPVTDFVPAKTQMRL
Sbjct: 241 TRDVNTCNLVVGNVGEYHSGTGAKRSGRRKGKKGKKGKREAPVTDFVPAKTQMRLDENAA 300
Query: 301 XXXXXXXXXPELVVGEAVNDNLPVVESESEFSRGKYLIYMGGGERCKSMNHYVWGFLCAL 360
PELVVGEAVNDNLPVVESESEFSRGKYLIYMGGGERCKSMNHYVWGFLCAL
Sbjct: 301 NADTTAASEPELVVGEAVNDNLPVVESESEFSRGKYLIYMGGGERCKSMNHYVWGFLCAL 360
Query: 361 GEAQYLNRTLVMDLNVCLNSRYTSSGKDEERDFRLYFDFEHLKQSASVIDQSQFWTDWGK 420
GEAQYLNRTLVMDLNVCLNSRYTSSGKDEERDFRLYFDFEHLKQSASVIDQSQFWTDWGK
Sbjct: 361 GEAQYLNRTLVMDLNVCLNSRYTSSGKDEERDFRLYFDFEHLKQSASVIDQSQFWTDWGK 420
Query: 421 WHKKDRLKNHYTEDIKVTPMQLRDVKDTLIMRKFGNVEPDNFWSRVCEGETEAVIKRPWY 480
WHKKDRLKNHYTEDIKVTPMQLRDVKDTLIMRKFGNVEPDNFWSRVCEGETEAVIKRPWY
Sbjct: 421 WHKKDRLKNHYTEDIKVTPMQLRDVKDTLIMRKFGNVEPDNFWSRVCEGETEAVIKRPWY 480
Query: 481 LLWKSRRLMEIVSAISSRMDWDFDSVHVVRGEKAQNKQLWPNLDRDTSPDSLLTTLNDKV 540
LLWKSRRLMEIVSAISSRMDWDFDSVHVVRGEKAQNKQLWPNLDRDTSPDSLLTTLNDKV
Sbjct: 481 LLWKSRRLMEIVSAISSRMDWDFDSVHVVRGEKAQNKQLWPNLDRDTSPDSLLTTLNDKV 540
Query: 541 GAGRHLYIATNEPDKSFFDPMKGKYRTHFLDDFKDLWDENSEWYTETKELSNGNAVEFDG 600
GAGRHLYIATNEPDKSFFDPMKGKYRTHFLDDFKDLWDENSEWYTETKELSNGNAVEFDG
Sbjct: 541 GAGRHLYIATNEPDKSFFDPMKGKYRTHFLDDFKDLWDENSEWYTETKELSNGNAVEFDG 600
Query: 601 YMRVAVDTEVFLRGKRKLETFSDLTRDCKNGVNTCPASS 639
YMRVAVDTEVFLRGKRKLETFSDLTRDCKNGVNTCPASS
Sbjct: 601 YMRVAVDTEVFLRGKRKLETFSDLTRDCKNGVNTCPASS 639
>Os07g0633600 Conserved hypothetical protein
Length = 585
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/592 (41%), Positives = 325/592 (54%), Gaps = 91/592 (15%)
Query: 56 HSPDDPLLHPSSHQLTAFLTSATSNSTFL-ADDSVLRTGEDFXXXXXXXXXXXXXXXXXX 114
+ P DP L SS +T L+ NSTFL DDS+L TGE
Sbjct: 71 YQPPDPWLQ-SSAAITTSLSRVLPNSTFLLPDDSLLPTGE-------------------- 109
Query: 115 XXXXXVPFIKLEDVATKEESSGAERAVTVDTXXXXXXXXXXXXNPIVEAVSCDTEAPVDC 174
D + + A R D +CD +AP++C
Sbjct: 110 ------------DFNSSSSTPSAPRRDDPDQATATATAAAVNG-------TCDPDAPLNC 150
Query: 175 TGDKDLFNLLMRTAIEKFSDLHFYR-----FGRPVAVPG-SPMECDLAWRFRPAEDTNGR 228
+ + L A++ F+ F+R VPG P ECD+AWRFR + + R
Sbjct: 151 SDPRVL------AAVKAFNAKAFFRKSIVFLSYEAPVPGPKPGECDVAWRFRNRREKSWR 204
Query: 229 TTYYKDYRRFTLTRDVNTCNLVVGNVGEYHSGTGAXXXXXXXXXXXXXXXXEAPVTDFVP 288
Y+DYRRF L + C L + VG++ SGT A P D
Sbjct: 205 R--YRDYRRFVLVPG-DGCALDINRVGKFRSGTNAARPPRQKGSKNRNPRVAPPPVD--- 258
Query: 289 AKTQMRLXXXXXXXXXXXXXXPELVVGEAVNDNLPVVESESEFSRGKYLIYMGGGERCKS 348
+ND +P+V SE+EF RGKYL YM GG+ CKS
Sbjct: 259 ---------------------------AEINDTIPIVGSEAEFRRGKYLYYMRGGDHCKS 291
Query: 349 MNHYVWGFLCALGEAQYLNRTLVMDLNVCLNSRYTSSGKDEE-RDFRLYFDFEHLKQSAS 407
MN ++W FLC LGEA++LNRT VMDLN+CL+ +T++GKDE+ +DFR YFDFEHLK+S S
Sbjct: 292 MNQFIWSFLCGLGEAKFLNRTFVMDLNMCLSGAHTNNGKDEDGKDFRYYFDFEHLKESVS 351
Query: 408 VIDQSQFWTDWGKWHKKD---RLKNHYTEDIKVTPMQLRDVKDTLIMRKFGNVEPDNFWS 464
V+++ F DW +W KK R+ KVTPMQL+ K +I R F EP+N+W
Sbjct: 352 VVEEGDFLKDWKRWDKKKGPGRISVRKVPSYKVTPMQLKRDKSNIIWRLFDGQEPENYWY 411
Query: 465 RVCEGETEAVIKRPWYLLWKSRRLMEIVSAISSRMDWDFDSVHVVRGEKAQNKQLWPNLD 524
RVCEG VI+RPWY +WKS+RLM IV+ I+ RMDWD+D +HV+RG KAQNKQ++PNLD
Sbjct: 412 RVCEGRAAKVIQRPWYAIWKSKRLMNIVTEIAGRMDWDYDGLHVIRGWKAQNKQMYPNLD 471
Query: 525 RDTSPDSLLTTLNDKVGAG-RHLYIATNEPDKSFFDPMKGKYRTHFLDDFKDLWDENSEW 583
DTSP++L+ + + R+LYIATNEP ++FD ++ + H LDD+K+LW SEW
Sbjct: 472 ADTSPEALVDKVPKLIKQPMRNLYIATNEPFYNYFDKLRSYFHVHLLDDYKELWSNTSEW 531
Query: 584 YTETKELSNGNAVEFDGYMRVAVDTEVFLRGKRKLETFSDLTRDCKNGVNTC 635
Y ET LS G V FD YMRV VDTEVF R K ++ETF++LTRDCK+G+NTC
Sbjct: 532 YNETTTLSGGRPVPFDAYMRVIVDTEVFYRAKTQVETFNNLTRDCKDGINTC 583
>Os01g0805100 Conserved hypothetical protein
Length = 259
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 159/274 (58%), Gaps = 17/274 (6%)
Query: 349 MNHYVWGFLCALGEAQYLNRTLVMDLNVCLNSRYTSSGKDEERDFRLYFDFEHLKQSASV 408
M HY+ LC++ EA+YLNRTLV+DL+VCL + Y +E + Y D EHL+ +
Sbjct: 1 MPHYLRSLLCSIAEARYLNRTLVLDLSVCLAAAYAGGMPEEGKRLAFYIDIEHLQSVVGI 60
Query: 409 IDQSQFWTDWGKWHKKDRLKNHYTEDIKVTPMQLRDVKDTLIMRKFGNVEPDNFWSRVCE 468
++ +FW DW KW + +L ED +V P + +D LI+RKFG+VEP N+W VCE
Sbjct: 61 VEHKRFWEDWDKWGAQGQLGVRIIEDSRVAPTKFSKSRDPLIVRKFGDVEPGNYWYNVCE 120
Query: 469 GETEAVIKRPWYLLWKSRRLMEIVSAISSRMDWDFDSVHVVRGEKAQNKQLWPNLDRDTS 528
GE E V++ P + + LM+IV I SRM DFDSVHV + +++ L+
Sbjct: 121 GEAEHVLRPPQGAIRTAPSLMDIVDGIISRMQVDFDSVHVGGNDGNLRRRIEERLN---- 176
Query: 529 PDSLLTTLNDKVGAGRHLYIATNEPDKSFFDPMKGKYRT-HFLDDFKDLWDENSEWYTET 587
G GR +Y+A + D +K KY + H+LD F++LW +S+W+ E
Sbjct: 177 ------------GGGRQVYVAGEGINVVLLDALKAKYSSVHYLDAFEELWARDSKWFLEM 224
Query: 588 KELSNGNAVEFDGYMRVAVDTEVFLRGKRKLETF 621
K L+ G VEFDGYMR VD EVFL+GK+K+E
Sbjct: 225 KRLNGGVPVEFDGYMRELVDREVFLKGKKKVEVL 258
>Os03g0335700
Length = 244
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 94/150 (62%), Gaps = 17/150 (11%)
Query: 211 MECDLAWRFRPAEDTNGRTTYYKDYRRFTLTRDVNTCNLVVGNVGEYHSGTGAXXXXXXX 270
MECDLAWRFRPAEDTNGRTTYYKD RRFTLT DVNTCNLVVGNVGEYHS TGA
Sbjct: 1 MECDLAWRFRPAEDTNGRTTYYKDNRRFTLTCDVNTCNLVVGNVGEYHSSTGAKCSGRRK 60
Query: 271 XXXXXXXXXEAPVTDFVPAKTQMRLXXXXXXXXXXXXXXPELVVGEAVNDNLPVVESESE 330
EAPVTDFVPAKTQMRL P +
Sbjct: 61 GKKGKKGKREAPVTDFVPAKTQMRLDENAANADTTAASEP-----------------GAS 103
Query: 331 FSRGKYLIYMGGGERCKSMNHYVWGFLCAL 360
RGKYLIYMGGGERCKS+NHYV FLCAL
Sbjct: 104 CRRGKYLIYMGGGERCKSVNHYVSPFLCAL 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,964,875
Number of extensions: 748138
Number of successful extensions: 1356
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1346
Number of HSP's successfully gapped: 4
Length of query: 639
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 532
Effective length of database: 11,448,903
Effective search space: 6090816396
Effective search space used: 6090816396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)