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Os01g0805100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7 (0.02) R2 : 0.454
β1 : 1.39 (0.0731) R2dD : 0.45 R2D : 0.358
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.33 (0.0426) R2dN8 : 0.0962 R2N8 : 0.00483
σ : 0.375
deviance : 64.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.27 0.333 6.99 1.36 0.293 -0.561 -1.36 -0.601 0.339 5.87 80 1536 -- --
50.4 0.331 6.99 1.4 0.254 -0.614 -1.36 -- 0.346 6.03 79.77 1615 -- --
54.62 0.344 6.99 1.35 0.304 -0.574 -- -0.623 0.344 5.2 79.59 1492 -- --
54.47 0.344 6.99 1.4 0.24 -0.661 -- -- 0.348 5.44 79 1652 -- --
56.79 0.351 6.99 1.42 -- -0.762 -- 0.196 0.361 -- 79.88 1736 -- --
54.6 0.346 7 1.39 0.313 -- -1.41 -- 0.317 5.73 -- -- -- --
59.25 0.36 6.99 1.38 0.31 -- -- -- 0.322 4.99 -- -- -- --
56.62 0.35 6.99 1.41 -- -0.756 -- -- 0.359 -- 78.58 1744 -- --
102.79 0.472 7.01 -- 0.299 -0.659 -- -- 0.249 5.06 87 1585 -- --
64.3 0.375 7 1.39 -- -- -- -- 0.33 -- -- -- -- --
109.47 0.489 7.03 -- 0.335 -- -- -- 0.169 4.85 -- -- -- --
106.04 0.48 7.01 -- -- -0.746 -- -- 0.283 -- 87.58 1824 -- --
115.39 0.501 7.03 -- -- -- -- -- 0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.21 wind 7.0 720 < th dose independent rect. 15 4
3 47.86 wind 7.0 720 < th dose independent rect. 17 1
6 48.52 humidity 50.0 30 > th dose dependent rect. 5 21
8 48.58 wind 5.0 1440 < th dose independent rect. 21 1
9 48.58 radiation 10.0 1440 < th dose independent rect. 3 2
10 48.59 wind 7.0 720 < th dose independent rect. 15 12
13 48.66 wind 5.0 1440 > th dose independent rect. 21 1
14 48.69 radiation 20.0 1440 < th dose dependent rect. 3 2
19 48.90 wind 7.0 720 < th dose independent rect. 15 20
22 48.95 humidity 80.0 90 > th dose independent rect. 5 21
26 48.99 humidity 80.0 1440 < th dose independent rect. 23 16
32 49.07 radiation 1.0 1440 > th dose independent rect. 10 3
46 49.26 wind 9.0 720 < th dose independent rect. 7 12
56 49.31 radiation 1.0 720 > th dose independent rect. 7 12
76 49.38 temperature 30.0 720 < th dose independent rect. 18 13
80 49.41 humidity 80.0 1440 > th dose independent rect. 24 16
84 49.43 wind 9.0 4320 > th dose dependent rect. 18 3
85 49.44 radiation 1.0 720 < th dose dependent rect. 19 22
86 49.45 radiation 1.0 720 < th dose independent rect. 14 1
87 49.45 radiation 1.0 720 < th dose dependent rect. 14 1
94 49.50 humidity 80.0 1440 < th dose independent sin 4 NA
104 49.53 radiation 1.0 1440 < th dose independent rect. 9 4
105 49.53 radiation 1.0 1440 < th dose dependent rect. 9 4
108 49.56 humidity 80.0 270 > th dose independent rect. 3 21
111 49.57 radiation 1.0 1440 < th dose independent rect. 11 2
115 49.57 radiation 1.0 1440 < th dose dependent rect. 11 2
128 49.61 radiation 20.0 14400 < th dose independent rect. 3 3
133 49.62 wind 5.0 90 < th dose independent rect. 16 13
140 49.63 wind 7.0 4320 < th dose independent rect. 17 4
143 49.64 humidity 70.0 720 > th dose independent rect. 19 12
147 49.66 wind 7.0 4320 > th dose independent rect. 17 4
181 49.74 atmosphere 1005.0 90 > th dose independent rect. 1 4
186 49.75 radiation 1.0 720 < th dose independent rect. 19 22
188 49.75 radiation 1.0 720 < th dose dependent rect. 3 22
192 49.76 humidity 80.0 720 < th dose independent rect. 19 17
206 49.80 atmosphere 995.0 30 > th dose dependent rect. 16 13
216 49.82 temperature 20.0 270 > th dose independent rect. 11 12
219 49.82 temperature 30.0 720 < th dose independent rect. 18 15
230 49.85 temperature 15.0 720 > th dose independent rect. 11 5
232 49.85 radiation 1.0 720 < th dose independent rect. 3 22
243 49.87 humidity 80.0 1440 > th dose independent sin 3 NA
277 49.95 wind 7.0 4320 > th dose independent rect. 17 12
290 49.97 humidity 80.0 720 > th dose independent rect. 21 2
291 49.97 radiation 1.0 720 < th dose independent rect. 17 7
297 49.98 wind 7.0 4320 < th dose independent rect. 17 12
307 49.99 radiation 1.0 720 > th dose independent rect. 15 22
316 50.00 wind 5.0 1440 > th dose dependent rect. 17 5
329 50.02 wind 9.0 30 < th dose dependent rect. 16 13
331 50.03 wind 7.0 720 > th dose independent rect. 14 2
338 50.04 humidity 80.0 1440 < th dose independent rect. 9 6
348 50.05 wind 9.0 14400 > th dose dependent rect. 10 1
361 50.06 humidity 50.0 720 > th dose dependent rect. 19 12
377 50.09 wind 9.0 720 < th dose independent rect. 7 20
406 50.13 humidity 80.0 1440 > th dose independent rect. 20 15
411 50.14 humidity 80.0 720 > th dose independent rect. 20 5
426 50.15 humidity 80.0 270 > th dose independent rect. 19 16
429 50.15 wind 5.0 720 > th dose dependent rect. 14 1
433 50.16 precipitation 0.1 720 < th dose independent rect. 16 19
435 50.16 precipitation 0.1 720 < th dose dependent rect. 16 19
443 50.17 wind 9.0 720 < th dose dependent rect. 15 4
448 50.18 humidity 80.0 270 > th dose independent rect. 19 19
459 50.19 radiation 1.0 720 > th dose independent rect. 13 23
485 50.22 wind 7.0 4320 < th dose independent rect. 17 1
486 50.22 radiation 1.0 720 < th dose independent rect. 14 10
497 50.23 humidity 80.0 1440 > th dose independent rect. 9 6
510 50.23 humidity 90.0 720 < th dose dependent rect. 17 19
541 50.25 radiation 1.0 1440 < th dose dependent rect. 8 9
547 50.26 wind 9.0 4320 < th dose independent rect. 16 17
555 50.26 wind 7.0 4320 > th dose dependent rect. 16 14
556 50.26 humidity 50.0 10 > th dose dependent rect. 12 14
580 50.28 temperature 20.0 30 > th dose independent rect. 19 7
589 50.28 atmosphere 1000.0 30 > th dose dependent rect. 2 3
598 50.29 temperature 10.0 720 > th dose independent rect. 7 12
599 50.29 temperature 10.0 720 > th dose independent rect. 19 12
601 50.29 humidity 50.0 720 > th dose independent rect. 19 12
602 50.29 atmosphere 995.0 720 > th dose independent rect. 19 12
603 50.29 atmosphere 1015.0 720 < th dose independent rect. 7 12
604 50.29 radiation 30.0 720 < th dose independent rect. 19 12
636 50.31 humidity 50.0 720 > th dose independent rect. 3 21
644 50.32 precipitation 0.1 720 < th dose independent rect. 23 5
648 50.32 precipitation 0.1 720 < th dose dependent rect. 23 5
649 50.32 radiation 40.0 720 < th dose dependent rect. 19 12
658 50.33 temperature 15.0 10 > th dose independent rect. 12 14
663 50.33 temperature 15.0 30 > th dose independent rect. 5 21
677 50.34 radiation 10.0 720 < th dose dependent rect. 14 10
679 50.34 humidity 60.0 270 > th dose dependent rect. 19 20
685 50.35 precipitation 0.1 270 < th dose independent rect. 23 12
691 50.35 precipitation 0.1 270 < th dose dependent rect. 23 12
709 50.38 wind 9.0 14400 < th dose independent rect. 10 1
729 50.39 precipitation 0.1 720 < th dose independent rect. 7 12
737 50.39 precipitation 0.1 720 < th dose dependent rect. 7 12
741 50.40 wind 9.0 14400 > th dose independent rect. 10 1
776 50.42 radiation 20.0 1440 < th dose independent rect. 13 1
808 50.44 radiation 1.0 720 > th dose independent rect. 17 2
837 50.45 humidity 80.0 1440 < th dose independent rect. 9 23
864 50.47 humidity 80.0 1440 < th dose independent rect. 13 23
869 50.48 humidity 80.0 1440 < th dose independent no NA NA
871 50.48 temperature 20.0 270 > th dose independent rect. 19 4
873 50.48 wind 7.0 720 > th dose independent rect. 14 6
882 50.48 humidity 80.0 1440 < th dose independent rect. 5 23
884 50.48 humidity 90.0 720 < th dose dependent sin 9 NA
885 50.48 wind 3.0 1440 > th dose dependent rect. 21 1
911 50.50 humidity 80.0 1440 < th dose independent rect. 11 3
919 50.50 radiation 20.0 1440 < th dose dependent rect. 19 10
921 50.50 humidity 50.0 720 > th dose dependent rect. 12 19
934 50.51 humidity 50.0 720 > th dose independent rect. 4 19
937 50.51 humidity 80.0 1440 > th dose independent rect. 9 23
944 50.52 radiation 1.0 720 > th dose independent rect. 15 4
967 50.52 humidity 80.0 1440 < th dose independent rect. 3 23
987 50.53 wind 9.0 4320 > th dose dependent rect. 18 1