BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0446600 Os10g0446600|AK111774
         (111 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0446600  Conserved hypothetical protein                      205   5e-54
Os04g0169300  Conserved hypothetical protein                      196   5e-51
Os01g0391500  Conserved hypothetical protein                      118   8e-28

>Os10g0446600 Conserved hypothetical protein
          Length = 111

 Score =  205 bits (522), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 99/111 (89%), Positives = 99/111 (89%)

Query: 1   MTSSEQLMAPEXXXXXXXXXXXXQEITKDVQVNSRRKFEKWDIAITTLEPNINTMLIAIV 60
           MTSSEQLMAPE            QEITKDVQVNSRRKFEKWDIAITTLEPNINTMLIAIV
Sbjct: 1   MTSSEQLMAPETAAATVTTKLLAQEITKDVQVNSRRKFEKWDIAITTLEPNINTMLIAIV 60

Query: 61  PGKERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKICNYPMILCLRII 111
           PGKERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKICNYPMILCLRII
Sbjct: 61  PGKERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKICNYPMILCLRII 111



>Os04g0169300 Conserved hypothetical protein
          Length = 120

 Score =  196 bits (497), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/111 (84%), Positives = 97/111 (87%)

Query: 1   MTSSEQLMAPEXXXXXXXXXXXXQEITKDVQVNSRRKFEKWDIAITTLEPNINTMLIAIV 60
           MTSSEQLMAPE            QE+TKD+QVNSRRKFEKWDIAITT EPNINTMLIAIV
Sbjct: 1   MTSSEQLMAPETAAMTVTTKLLAQELTKDLQVNSRRKFEKWDIAITTSEPNINTMLIAIV 60

Query: 61  PGKERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKICNYPMILCLRII 111
           PGKERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKI NYPM+LCLRII
Sbjct: 61  PGKERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKISNYPMMLCLRII 111



>Os01g0391500 Conserved hypothetical protein
          Length = 119

 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 64/104 (61%), Gaps = 27/104 (25%)

Query: 1   MTSSEQLMAPEXXXXXXXXXXXXQEITKDVQVNSRRKFEKWDIAITTLEPNINTMLIAIV 60
           MTSSEQLMAPE            QE+TKDVQV                           +
Sbjct: 1   MTSSEQLMAPETAVATVTTKLLAQELTKDVQV---------------------------L 33

Query: 61  PGKERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKICNYPM 104
           P KERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKICNYPM
Sbjct: 34  PSKERDYNAYSKDYMSSIVKQSCTNTRSCFRDGDIPSKICNYPM 77



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,992,477
Number of extensions: 93539
Number of successful extensions: 172
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 3
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)