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Os04g0169300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.86 (0.0232) R2 : 0.0978
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.343 (0.0488) R2dN8 : 0.126 R2N8 : 0.0978
σ : 0.436
deviance : 87.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.65 0.35 8.92 -0.701 0.562 0.564 0.153 1.92 0.214 17.3 30 694 -- --
55.73 0.348 8.9 -0.543 0.534 0.708 0.0698 -- 0.205 17.3 30.3 705 -- --
55.7 0.348 8.92 -0.692 0.561 0.565 -- 1.81 0.216 17.3 30 693 -- --
55.69 0.348 8.91 -0.516 0.536 0.744 -- -- 0.203 17.2 30.41 713 -- --
63.15 0.37 8.91 -0.515 -- 0.566 -- 0.175 0.159 -- 30.54 2580 -- --
68.21 0.387 8.88 -0.627 0.388 -- -0.217 -- 0.283 16.2 -- -- -- --
68.34 0.387 8.88 -0.629 0.386 -- -- -- 0.282 16.2 -- -- -- --
63.08 0.37 8.91 -0.489 -- 0.564 -- -- 0.164 -- 30.4 2577 -- --
62.12 0.367 8.9 -- 0.431 0.691 -- -- 0.233 17.2 30.6 944 -- --
76.4 0.408 8.88 -0.644 -- -- -- -- 0.271 -- -- -- -- --
78.76 0.415 8.87 -- 0.398 -- -- -- 0.352 16.1 -- -- -- --
69.11 0.387 8.9 -- -- 0.626 -- -- 0.208 -- 30.37 2578 -- --
87.35 0.436 8.86 -- -- -- -- -- 0.343 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.61 temperature 30.0 270 < th dose independent rect. 7 18
4 50.25 humidity 70.0 270 > th dose independent rect. 15 11
11 50.86 temperature 10.0 270 > th dose dependent rect. 2 17
17 51.30 temperature 30.0 270 < th dose independent rect. 16 10
23 51.57 humidity 50.0 270 > th dose independent rect. 7 18
28 51.70 humidity 50.0 270 > th dose independent rect. 5 22
36 51.91 temperature 10.0 270 > th dose dependent rect. 11 9
41 51.95 humidity 90.0 270 < th dose dependent rect. 12 8
57 52.40 temperature 10.0 270 > th dose dependent rect. 12 19
80 52.75 temperature 10.0 270 > th dose dependent rect. 11 21
82 52.76 radiation 1.0 270 < th dose independent rect. 6 20
90 52.84 radiation 1.0 270 < th dose dependent rect. 5 21
104 52.94 humidity 50.0 270 > th dose dependent rect. 7 18
107 52.97 radiation 10.0 270 < th dose dependent rect. 15 11
112 53.03 radiation 1.0 270 < th dose independent rect. 8 18
128 53.17 temperature 10.0 30 > th dose dependent rect. 15 18
196 53.63 humidity 50.0 270 > th dose dependent rect. 15 10
202 53.68 radiation 1.0 270 < th dose independent rect. 15 11
213 53.77 temperature 15.0 30 > th dose dependent rect. 12 21
214 53.78 temperature 10.0 30 > th dose dependent rect. 3 6
220 53.82 humidity 80.0 270 < th dose dependent sin 16 NA
228 53.89 temperature 10.0 10 > th dose dependent rect. 3 17
258 54.09 temperature 30.0 720 < th dose independent rect. 14 22
265 54.12 temperature 30.0 720 < th dose independent rect. 15 20
268 54.13 humidity 70.0 270 > th dose independent sin 15 NA
284 54.21 humidity 70.0 270 < th dose independent sin 15 NA
296 54.26 wind 5.0 30 < th dose independent rect. 3 6
314 54.32 atmosphere 995.0 30 > th dose dependent rect. 9 18
333 54.39 radiation 30.0 90 < th dose independent rect. 3 6
352 54.47 humidity 70.0 270 < th dose independent rect. 13 7
393 54.55 humidity 70.0 90 > th dose independent rect. 3 6
402 54.57 temperature 30.0 720 < th dose independent rect. 7 12
406 54.59 temperature 10.0 270 > th dose dependent rect. 1 6
446 54.68 atmosphere 995.0 30 > th dose independent rect. 9 18
453 54.70 precipitation 0.1 30 < th dose independent rect. 3 6
466 54.70 precipitation 0.1 30 < th dose dependent rect. 3 6
468 54.71 temperature 30.0 720 < th dose independent rect. 22 21
471 54.71 humidity 90.0 10 < th dose dependent rect. 15 18
481 54.75 temperature 30.0 270 < th dose independent sin 17 NA
484 54.75 wind 9.0 30 < th dose dependent rect. 3 6
492 54.76 temperature 30.0 270 > th dose independent rect. 12 7
507 54.76 temperature 30.0 720 < th dose independent rect. 24 19
551 54.86 humidity 90.0 10 < th dose dependent rect. 15 6
574 54.92 temperature 30.0 720 < th dose independent rect. 14 5
575 54.92 temperature 30.0 90 < th dose independent rect. 3 6
588 54.95 temperature 10.0 30 > th dose independent rect. 3 6
591 54.95 humidity 50.0 30 > th dose independent rect. 3 6
593 54.95 atmosphere 995.0 30 > th dose independent rect. 3 6
594 54.95 atmosphere 1015.0 30 < th dose independent rect. 3 6
596 54.95 temperature 10.0 30 > th dose independent rect. 9 18
602 54.96 temperature 30.0 270 > th dose independent sin 17 NA
646 55.05 precipitation 0.1 270 < th dose independent rect. 1 6
653 55.05 precipitation 0.1 270 < th dose dependent rect. 1 6
655 55.06 temperature 30.0 720 < th dose independent rect. 14 14
657 55.06 humidity 80.0 270 < th dose dependent rect. 15 2
672 55.08 wind 7.0 270 < th dose independent rect. 1 6
698 55.11 radiation 20.0 270 < th dose independent rect. 1 6
735 55.15 humidity 70.0 270 > th dose independent rect. 1 6
736 55.15 wind 9.0 270 < th dose independent rect. 7 18
765 55.19 wind 9.0 30 < th dose independent rect. 9 18
798 55.22 humidity 90.0 270 < th dose independent rect. 12 8
809 55.24 temperature 10.0 270 > th dose independent rect. 1 6
811 55.24 temperature 30.0 270 < th dose independent rect. 1 6
812 55.24 humidity 50.0 270 > th dose independent rect. 1 6
814 55.24 atmosphere 995.0 270 > th dose independent rect. 1 6
815 55.24 atmosphere 1015.0 270 < th dose independent rect. 1 6
817 55.24 temperature 10.0 270 > th dose independent rect. 7 18
822 55.26 temperature 30.0 270 > th dose independent rect. 15 1
823 55.26 temperature 15.0 270 > th dose independent rect. 2 16
907 55.40 wind 1.0 270 > th dose independent rect. 1 6
919 55.42 humidity 50.0 270 > th dose dependent rect. 11 14
931 55.44 radiation 40.0 270 < th dose dependent rect. 1 6
938 55.45 radiation 1.0 270 > th dose independent rect. 10 21
942 55.46 precipitation 0.1 10 < th dose independent rect. 9 18
946 55.46 precipitation 0.1 10 < th dose dependent rect. 9 18
951 55.48 temperature 30.0 720 > th dose independent rect. 14 22
961 55.50 precipitation 0.1 270 < th dose independent rect. 13 17
965 55.50 precipitation 0.1 270 < th dose dependent rect. 13 17
974 55.52 temperature 30.0 720 < th dose independent rect. 5 14
991 55.55 temperature 30.0 270 < th dose independent rect. 18 23