Os10g0446600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0446600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.11 | 0.385 | 7.5 | 0.312 | 0.638 | 1.46 | -0.901 | 1.39 | 0.04 | 11.8 | 19.46 | 10 | -- | -- |
| 68.67 | 0.386 | 7.53 | 0.0935 | 0.606 | 1.55 | -0.623 | -- | -0.0326 | 11.6 | 19.55 | 10 | -- | -- |
| 69.71 | 0.389 | 7.5 | 0.188 | 0.647 | 1.44 | -- | 0.619 | 0.0366 | 12 | 19.23 | 9 | -- | -- |
| 69.78 | 0.389 | 7.52 | 0.0489 | 0.649 | 1.49 | -- | -- | -0.0245 | 11.9 | 19.37 | 9 | -- | -- |
| 89.35 | 0.44 | 7.55 | -0.0429 | -- | 2.04 | -- | 0.252 | -0.109 | -- | 18.9 | 6 | -- | -- |
| 102.04 | 0.474 | 7.46 | 0.373 | 1.13 | -- | -0.172 | -- | 0.231 | 13 | -- | -- | -- | -- |
| 102.17 | 0.473 | 7.46 | 0.367 | 1.13 | -- | -- | -- | 0.23 | 13 | -- | -- | -- | -- |
| 89.36 | 0.44 | 7.55 | -0.0823 | -- | 2.04 | -- | -- | -0.118 | -- | 18.9 | 4 | -- | -- |
| 69.83 | 0.389 | 7.53 | -- | 0.639 | 1.52 | -- | -- | -0.0339 | 11.9 | 19.17 | 9 | -- | -- |
| 180.9 | 0.628 | 7.48 | 0.324 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 105.71 | 0.481 | 7.47 | -- | 1.12 | -- | -- | -- | 0.189 | 13 | -- | -- | -- | -- |
| 89.52 | 0.441 | 7.55 | -- | -- | 2.02 | -- | -- | -0.105 | -- | 18.9 | 3 | -- | -- |
| 183.67 | 0.633 | 7.49 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 8 | 67.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 10 | 67.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 11 | 67.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 12 | 67.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 13 | 67.18 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 23 | 67.60 | temperature | 15 | 10 | > th | dose dependent | sin | 0 | NA |
| 52 | 68.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 62 | 68.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 79 | 68.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 82 | 68.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 96 | 68.99 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 99 | 69.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 100 | 69.10 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 136 | 69.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 154 | 69.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 159 | 69.81 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 171 | 69.97 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 174 | 70.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 175 | 70.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 194 | 70.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 206 | 70.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 212 | 70.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 231 | 70.65 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 238 | 70.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 253 | 70.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 258 | 70.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 264 | 71.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 276 | 71.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 336 | 71.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 421 | 72.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 430 | 72.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 437 | 72.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 447 | 72.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 453 | 73.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 530 | 73.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 577 | 73.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 581 | 73.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 701 | 74.02 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 720 | 74.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 721 | 74.10 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 747 | 74.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 11 |
| 762 | 74.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 13 |
| 795 | 74.27 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 801 | 74.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 15 |
| 814 | 74.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 836 | 74.33 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 936 | 74.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 946 | 74.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 11 |