BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0445500 Os10g0445500|AK059279
         (158 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0445500  HR-like lesion-inducer family protein               280   3e-76
Os03g0149200  HR-like lesion-inducer family protein               211   1e-55
Os04g0181100  HR-like lesion-inducer family protein               188   1e-48

>Os10g0445500 HR-like lesion-inducer family protein
          Length = 158

 Score =  280 bits (717), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 141/158 (89%), Positives = 141/158 (89%)

Query: 1   MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60
           MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI
Sbjct: 1   MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60

Query: 61  ELKHIVAAMIXXXXXXXXXXXXXXXXXAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120
           ELKHIVAAMI                 AYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT
Sbjct: 61  ELKHIVAAMISLKGLGGLLFILSSSLGAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120

Query: 121 KFAQNCALVGALLFFLAMKNSIPKRQPNRKKAPKPKST 158
           KFAQNCALVGALLFFLAMKNSIPKRQPNRKKAPKPKST
Sbjct: 121 KFAQNCALVGALLFFLAMKNSIPKRQPNRKKAPKPKST 158



>Os03g0149200 HR-like lesion-inducer family protein
          Length = 157

 Score =  211 bits (538), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 1   MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60
           MGF+SFAGRVLFA+ FLLSAYQEFSEFG DGGPAAKAL+PK+N    NIS   G+ VPH+
Sbjct: 1   MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60

Query: 61  ELKHIVAAMIXXXXXXXXXXXXXXXXXAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120
           ELKHIVAA I                 AYLLL +LAFITPVV+DFYNYD+E +EFVQLF 
Sbjct: 61  ELKHIVAATIGLKGLGGLLFILSSSFGAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120

Query: 121 KFAQNCALVGALLFFLAMKNSIPKRQPNRKKAPKPKST 158
           KF QN AL GALLFFL MKNSIPKRQ  +KKAPK K+ 
Sbjct: 121 KFTQNLALFGALLFFLGMKNSIPKRQA-KKKAPKSKTN 157



>Os04g0181100 HR-like lesion-inducer family protein
          Length = 157

 Score =  188 bits (478), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 1   MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60
           MGF+SF GRVLFA+ FLLSAYQEFSEFG DGGPAAKAL+PKFN     +S   G+ VPHI
Sbjct: 1   MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60

Query: 61  ELKHIVAAMIXXXXXXXXXXXXXXXXXAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120
           ++K ++AA +                 A+LLL +LA ITPVV+DFYNY++ES++FVQLF 
Sbjct: 61  DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120

Query: 121 KFAQNCALVGALLFFLAMKNSIPKRQPNRKKAPKPKST 158
           KF+QN AL GALLFFL MKNSIP+R   R +A K K+ 
Sbjct: 121 KFSQNLALFGALLFFLGMKNSIPRRHSKR-RAGKTKTN 157



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,341,241
Number of extensions: 133641
Number of successful extensions: 335
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 3
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)