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Os04g0181100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HR-like lesion-inducer family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0178) R2 : 0.209
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.412 (0.0375) R2dN8 : 0.27 R2N8 : 0.209
σ : 0.335
deviance : 51.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.92 0.261 12.9 -0.0308 0.265 0.448 0.255 -1.26 0.293 22.4 19.11 2041 -- --
32.41 0.265 12.9 0.0596 0.288 0.826 0.152 -- 0.325 22.1 18.5 3023 -- --
31.14 0.26 12.9 -0.0353 0.27 0.457 -- -1.27 0.294 22.4 19.1 1986 -- --
32.46 0.265 12.9 0.0497 0.297 0.845 -- -- 0.308 22 18.48 3024 -- --
35.33 0.277 12.9 -0.0696 -- 0.486 -- -1.19 0.28 -- 19.11 2108 -- --
41.74 0.303 12.9 0.431 0.283 -- 0.19 -- 0.459 22.4 -- -- -- --
41.89 0.303 12.9 0.423 0.282 -- -- -- 0.458 22.3 -- -- -- --
36.66 0.282 12.9 0.0746 -- 0.824 -- -- 0.323 -- 18.5 2169 -- --
32.46 0.265 12.9 -- 0.291 0.881 -- -- 0.299 22.1 18.42 3046 -- --
46.75 0.319 12.9 0.428 -- -- -- -- 0.459 -- -- -- -- --
46.61 0.319 12.9 -- 0.285 -- -- -- 0.411 22.4 -- -- -- --
36.7 0.282 12.9 -- -- 0.862 -- -- 0.3 -- 18.7 2204 -- --
51.57 0.335 12.9 -- -- -- -- -- 0.412 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.72 humidity 50 43200 < th dose independent rect. 8 1
2 30.82 humidity 50 43200 > th dose independent rect. 7 2
9 31.05 humidity 50 43200 < th dose dependent rect. 7 2
12 31.16 humidity 50 43200 > th dose independent rect. 21 12
13 31.16 humidity 50 43200 < th dose independent rect. 21 12
24 31.24 humidity 50 43200 > th dose independent rect. 2 7
32 31.34 humidity 50 43200 < th dose dependent rect. 20 13
38 31.57 temperature 20 14400 < th dose independent rect. 18 7
39 31.57 radiation 10 4320 > th dose dependent rect. 6 1
40 31.58 temperature 20 14400 < th dose independent rect. 20 1
41 31.58 temperature 20 14400 < th dose independent rect. 19 5
44 31.62 temperature 20 14400 < th dose independent rect. 20 3
75 31.72 temperature 20 14400 > th dose independent rect. 18 7
79 31.73 wind 1 43200 > th dose independent rect. 2 1
81 31.74 temperature 20 4320 > th dose independent rect. 18 1
105 31.84 wind 1 43200 < th dose independent rect. 2 1
107 31.84 humidity 90 14400 > th dose dependent rect. 1 16
109 31.85 radiation 20 4320 < th dose independent rect. 17 14
122 31.87 humidity 90 14400 > th dose dependent rect. 2 13
129 31.89 temperature 20 1440 < th dose independent rect. 5 2
150 31.94 temperature 20 1440 > th dose independent rect. 6 1
155 31.95 temperature 20 14400 < th dose independent sin 16 NA
159 31.95 radiation 30 4320 < th dose independent rect. 16 16
162 31.96 humidity 80 43200 > th dose independent rect. 6 1
173 31.98 humidity 80 43200 < th dose independent rect. 6 1
185 32.00 temperature 20 14400 > th dose independent sin 16 NA
202 32.02 humidity 90 14400 > th dose dependent sin 4 NA
230 32.07 humidity 90 14400 > th dose dependent rect. 3 8
278 32.15 radiation 20 4320 < th dose independent rect. 6 1
285 32.15 humidity 50 43200 > th dose dependent rect. 20 1
286 32.15 wind 3 43200 > th dose dependent rect. 4 9
294 32.16 wind 3 43200 > th dose dependent rect. 5 7
298 32.17 radiation 20 4320 < th dose independent rect. 2 5
320 32.19 wind 5 43200 > th dose independent rect. 9 1
327 32.19 radiation 20 4320 < th dose independent rect. 20 11
334 32.20 radiation 20 4320 < th dose independent rect. 22 9
349 32.21 temperature 20 14400 > th dose independent rect. 7 19
350 32.21 temperature 20 14400 < th dose independent rect. 7 19
352 32.21 wind 3 43200 > th dose dependent rect. 5 5
357 32.22 wind 7 43200 > th dose independent rect. 20 17
369 32.23 wind 7 43200 < th dose independent rect. 19 18
372 32.23 wind 3 43200 > th dose dependent rect. 5 2
381 32.24 humidity 90 14400 > th dose independent rect. 23 12
387 32.24 wind 5 43200 > th dose dependent rect. 9 3
434 32.28 wind 3 43200 > th dose dependent sin 6 NA
435 32.28 wind 5 43200 > th dose dependent rect. 9 1
436 32.28 wind 1 43200 < th dose dependent rect. 10 2
437 32.28 humidity 90 14400 > th dose dependent rect. 5 2
442 32.29 wind 5 43200 < th dose independent rect. 9 1
478 32.30 humidity 90 14400 > th dose dependent rect. 12 22
502 32.31 wind 5 43200 > th dose dependent rect. 8 5
504 32.31 wind 9 43200 < th dose dependent rect. 4 8
509 32.31 humidity 90 14400 > th dose dependent rect. 7 23
524 32.32 wind 5 43200 > th dose dependent rect. 19 18
528 32.33 wind 3 43200 < th dose independent rect. 13 2
530 32.33 wind 7 43200 > th dose independent rect. 6 7
583 32.35 humidity 90 14400 > th dose independent sin 7 NA
587 32.35 wind 1 14400 > th dose independent rect. 23 3
588 32.35 wind 7 43200 < th dose independent rect. 6 7
598 32.35 temperature 20 14400 < th dose independent rect. 15 18
604 32.35 humidity 90 14400 > th dose dependent no NA NA
627 32.36 temperature 20 14400 > th dose independent rect. 14 19
634 32.36 wind 9 43200 < th dose dependent rect. 5 1
644 32.36 humidity 90 14400 > th dose dependent rect. 15 23
650 32.37 wind 5 43200 > th dose independent rect. 5 5
657 32.37 wind 1 43200 > th dose independent rect. 8 18
668 32.37 wind 1 43200 < th dose dependent rect. 2 1
684 32.38 wind 7 43200 > th dose independent rect. 8 4
723 32.39 wind 7 43200 < th dose independent rect. 8 4
760 32.40 wind 3 43200 > th dose independent rect. 13 3
763 32.40 wind 5 43200 < th dose independent rect. 5 5
786 32.40 humidity 90 14400 > th dose dependent rect. 11 18
792 32.41 radiation 1 14400 < th dose independent rect. 7 1
839 32.42 radiation 1 14400 > th dose independent rect. 7 1
857 32.42 humidity 90 14400 > th dose independent rect. 15 13
872 32.42 temperature 20 14400 > th dose independent rect. 18 21
882 32.42 radiation 1 14400 < th dose dependent rect. 7 1
918 32.43 wind 1 43200 > th dose independent rect. 6 19
933 32.43 humidity 50 43200 > th dose dependent rect. 18 6
956 32.44 humidity 90 14400 > th dose independent rect. 13 15
957 32.44 wind 1 43200 > th dose independent rect. 10 16