BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0181100 Os04g0181100|005-012-C09
         (157 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0181100  HR-like lesion-inducer family protein               286   5e-78
Os03g0149200  HR-like lesion-inducer family protein               213   7e-56
Os10g0445500  HR-like lesion-inducer family protein               199   8e-52

>Os04g0181100 HR-like lesion-inducer family protein
          Length = 157

 Score =  286 bits (732), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 145/157 (92%), Positives = 145/157 (92%)

Query: 1   MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60
           MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI
Sbjct: 1   MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60

Query: 61  DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120
           DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV
Sbjct: 61  DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120

Query: 121 KFSQNXXXXXXXXXXXXMKNSIPRRHSKRRAGKTKTN 157
           KFSQN            MKNSIPRRHSKRRAGKTKTN
Sbjct: 121 KFSQNLALFGALLFFLGMKNSIPRRHSKRRAGKTKTN 157



>Os03g0149200 HR-like lesion-inducer family protein
          Length = 157

 Score =  213 bits (541), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 107/157 (68%), Positives = 133/157 (84%)

Query: 1   MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60
           MGF+SF GRVLFAS+FLLSAYQEFSEFG DGGPAAKAL+PK+N+FT+ +S  LG+AVPH+
Sbjct: 1   MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60

Query: 61  DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120
           ++K ++AAT+ LKG GGLLFI+SSSFGA+LLL+YLA ITPVVYDFYNY+ME S+FVQLF+
Sbjct: 61  ELKHIVAATIGLKGLGGLLFILSSSFGAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120

Query: 121 KFSQNXXXXXXXXXXXXMKNSIPRRHSKRRAGKTKTN 157
           KF+QN            MKNSIP+R +K++A K+KTN
Sbjct: 121 KFTQNLALFGALLFFLGMKNSIPKRQAKKKAPKSKTN 157



>Os10g0445500 HR-like lesion-inducer family protein
          Length = 158

 Score =  199 bits (505), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 1   MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60
           MGF+SF GRVLFA+ FLLSAYQEFSEFG DGGPAAKAL+PKFN     +S   G+ VPHI
Sbjct: 1   MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60

Query: 61  DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120
           ++K ++AA + LKG GGLLFI+SSS GA+LLL +LA ITPVV+DFYNY++ES++FVQLF 
Sbjct: 61  ELKHIVAAMISLKGLGGLLFILSSSLGAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120

Query: 121 KFSQNXXXXXXXXXXXXMKNSIPRRHSKR-RAGKTKTN 157
           KF+QN            MKNSIP+R   R +A K K+ 
Sbjct: 121 KFAQNCALVGALLFFLAMKNSIPKRQPNRKKAPKPKST 158



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,182,416
Number of extensions: 131886
Number of successful extensions: 341
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)