FiT-DB / Search/ Help/ Sample detail

Os10g0445500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HR-like lesion-inducer family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.23 (0.0183) R2 : 0.536
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.09 (0.0477) R2dC : 0.537 R2C : 0.533
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0513 (0.0385) R2dN8 : 0.00234 R2N8 : -0.0013
σ : 0.345
deviance : 54.32
__
_____
C
peak time of C : 17.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.91 0.325 9.22 0.166 1.25 0.631 0.123 0.711 0.165 16.7 28.5 15 -- --
48.57 0.325 9.2 0.284 1.24 0.619 -0.0827 -- 0.196 16.7 28.8 16 -- --
47.94 0.322 9.21 0.172 1.25 0.631 -- 0.658 0.169 16.7 28.47 15 -- --
48.57 0.325 9.2 0.281 1.25 0.614 -- -- 0.19 16.7 28.8 8 -- --
108.61 0.485 9.23 0.00462 -- -0.721 -- -0.372 -0.0445 -- 40.17 294 -- --
53.84 0.344 9.23 0.135 1.1 -- -0.0536 -- 0.0666 17.2 -- -- -- --
53.84 0.344 9.23 0.135 1.1 -- -- -- 0.0663 17.2 -- -- -- --
108.7 0.486 9.24 -0.0531 -- -0.731 -- -- -0.0602 -- 99.1 284 -- --
50.51 0.333 9.21 -- 1.21 0.493 -- -- 0.14 16.8 28.6 14 -- --
116.71 0.505 9.22 0.0963 -- -- -- -- 0.0387 -- -- -- -- --
54.32 0.345 9.23 -- 1.09 -- -- -- 0.0513 17.2 -- -- -- --
108.77 0.486 9.24 -- -- -0.714 -- -- -0.0523 -- 107.8 284 -- --
116.95 0.505 9.22 -- -- -- -- -- 0.028 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.34 temperature 25 10 < th dose independent rect. 23 17
9 47.41 temperature 25 30 < th dose independent rect. 8 8
31 47.71 temperature 25 10 < th dose independent sin 1 NA
32 47.72 wind 5 14400 > th dose dependent rect. 14 2
37 47.77 temperature 30 10 < th dose dependent rect. 9 9
50 47.85 wind 7 14400 > th dose independent rect. 14 1
53 47.85 temperature 30 10 < th dose dependent rect. 22 23
61 47.89 temperature 30 10 < th dose dependent rect. 19 23
63 47.91 temperature 25 1440 > th dose independent rect. 11 1
64 47.91 temperature 25 1440 < th dose independent rect. 11 1
69 47.92 wind 7 14400 < th dose independent rect. 14 1
95 48.03 temperature 30 10 < th dose dependent rect. 9 23
98 48.05 temperature 30 90 < th dose dependent rect. 23 18
102 48.08 temperature 25 10 > th dose independent rect. 23 23
105 48.09 humidity 70 43200 < th dose dependent rect. 10 2
107 48.09 temperature 30 10 < th dose dependent rect. 7 23
114 48.13 temperature 25 30 < th dose independent rect. 5 23
116 48.13 temperature 30 10 < th dose dependent rect. 11 23
117 48.14 temperature 30 10 < th dose dependent no NA NA
119 48.15 temperature 30 10 < th dose dependent rect. 13 23
121 48.16 temperature 30 720 < th dose dependent rect. 22 18
127 48.17 temperature 30 10 < th dose dependent rect. 17 23
135 48.22 temperature 25 1440 > th dose independent rect. 11 12
143 48.23 temperature 30 10 < th dose dependent rect. 1 23
144 48.24 temperature 25 10 > th dose independent rect. 5 17
151 48.26 temperature 30 10 < th dose dependent rect. 15 23
154 48.28 temperature 25 1440 < th dose independent rect. 11 12
157 48.29 humidity 60 720 > th dose independent rect. 16 7
164 48.29 temperature 30 10 < th dose dependent rect. 24 16
165 48.29 temperature 30 10 < th dose dependent rect. 5 23
168 48.30 temperature 30 10 < th dose dependent rect. 22 20
194 48.35 temperature 30 720 < th dose dependent rect. 19 15
198 48.35 temperature 30 10 < th dose dependent rect. 9 21
201 48.36 temperature 30 720 < th dose dependent sin 8 NA
206 48.37 humidity 50 720 > th dose independent sin 10 NA
207 48.37 temperature 30 720 < th dose dependent rect. 21 13
251 48.44 temperature 15 10 > th dose dependent rect. 3 22
260 48.45 temperature 30 10 < th dose dependent rect. 22 18
275 48.48 temperature 30 14400 < th dose independent rect. 12 1
276 48.48 humidity 70 43200 < th dose independent rect. 16 1
285 48.49 atmosphere 995 270 > th dose dependent rect. 9 6
290 48.50 humidity 60 43200 > th dose independent rect. 11 1
294 48.50 temperature 25 10 > th dose independent rect. 5 14
304 48.51 temperature 25 10 > th dose independent sin 23 NA
320 48.53 temperature 30 14400 > th dose independent rect. 12 1
326 48.53 temperature 30 10 < th dose dependent sin 2 NA
329 48.53 temperature 15 10 > th dose dependent rect. 3 9
330 48.53 temperature 30 720 < th dose dependent rect. 1 15
340 48.54 temperature 25 1440 > th dose dependent rect. 15 2
351 48.55 temperature 25 30 < th dose dependent sin 22 NA
362 48.56 wind 5 90 < th dose independent sin 2 NA
364 48.56 atmosphere 1000 270 > th dose independent rect. 14 8
377 48.57 temperature 25 10 > th dose independent rect. 15 23
386 48.58 temperature 25 10 < th dose independent rect. 6 11
393 48.58 temperature 15 10 > th dose dependent rect. 4 18
403 48.59 wind 1 90 > th dose dependent rect. 1 15
404 48.59 temperature 30 10 < th dose dependent rect. 9 19
418 48.60 humidity 70 43200 < th dose dependent rect. 18 19
422 48.61 humidity 70 720 > th dose independent rect. 17 3
423 48.61 humidity 70 43200 < th dose independent rect. 6 5
430 48.61 humidity 70 43200 < th dose dependent sin 6 NA
431 48.61 wind 1 43200 < th dose dependent rect. 4 1
454 48.63 humidity 60 43200 > th dose independent rect. 10 3
475 48.64 temperature 25 10 > th dose independent rect. 4 22
476 48.64 humidity 90 720 < th dose dependent rect. 17 5
477 48.64 atmosphere 995 90 > th dose dependent rect. 11 6
484 48.65 humidity 60 720 > th dose independent rect. 15 5
515 48.66 radiation 30 43200 > th dose dependent rect. 16 18
517 48.67 temperature 25 1440 > th dose independent sin 19 NA
527 48.67 radiation 30 43200 > th dose dependent rect. 7 3
538 48.67 radiation 30 4320 < th dose dependent rect. 20 9
552 48.68 temperature 25 10 > th dose independent no NA NA
553 48.68 radiation 30 43200 < th dose independent rect. 14 1
555 48.68 radiation 20 43200 > th dose independent rect. 6 2
575 48.68 radiation 10 43200 < th dose independent rect. 13 18
578 48.68 temperature 25 10 > th dose independent rect. 2 23
586 48.68 temperature 10 270 > th dose dependent rect. 15 18
591 48.69 radiation 30 14400 < th dose independent rect. 17 6
595 48.69 radiation 30 43200 > th dose independent rect. 16 17
596 48.69 radiation 40 43200 > th dose independent rect. 15 19
621 48.71 temperature 25 1440 < th dose independent sin 19 NA
623 48.71 radiation 1 1440 > th dose independent rect. 8 5
629 48.71 humidity 70 43200 < th dose independent rect. 19 16
711 48.72 radiation 40 43200 > th dose dependent rect. 12 1
712 48.72 radiation 20 43200 > th dose dependent rect. 14 1
726 48.73 humidity 70 43200 > th dose independent rect. 16 1
741 48.73 radiation 20 43200 < th dose dependent rect. 18 13
751 48.74 wind 5 90 < th dose independent rect. 16 19
768 48.75 humidity 70 43200 < th dose independent rect. 8 2
769 48.75 humidity 60 43200 < th dose independent rect. 9 5
771 48.75 wind 3 90 > th dose independent rect. 1 15
806 48.76 radiation 40 43200 < th dose independent rect. 12 22
807 48.76 radiation 30 43200 > th dose dependent sin 12 NA
808 48.76 radiation 10 43200 < th dose dependent rect. 5 2
814 48.76 temperature 10 720 > th dose dependent rect. 13 16
823 48.77 radiation 30 43200 < th dose independent rect. 7 3
835 48.77 radiation 30 43200 < th dose independent rect. 22 12
837 48.77 radiation 30 43200 < th dose independent rect. 19 15
845 48.77 temperature 25 10 < th dose independent rect. 8 20
847 48.77 temperature 10 10 > th dose dependent sin 5 NA
849 48.77 wind 1 43200 < th dose dependent rect. 6 2
855 48.77 temperature 30 720 < th dose dependent rect. 3 7
858 48.77 radiation 20 43200 < th dose dependent rect. 22 9
859 48.77 temperature 10 270 > th dose dependent rect. 1 10
918 48.79 radiation 20 43200 > th dose independent rect. 14 1
920 48.79 humidity 70 43200 < th dose independent rect. 19 2
922 48.79 radiation 40 43200 < th dose independent rect. 12 8
931 48.79 humidity 50 270 > th dose independent rect. 11 15
934 48.79 radiation 40 43200 < th dose independent rect. 12 18
962 48.79 radiation 1 43200 > th dose dependent rect. 17 14
964 48.79 radiation 1 43200 > th dose dependent rect. 16 16
973 48.80 radiation 40 43200 < th dose independent rect. 12 4
975 48.80 wind 5 14400 > th dose independent rect. 11 6
994 48.80 temperature 25 10 < th dose independent rect. 9 23