BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0445500 Os10g0445500|AK059279
(158 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04340.1 | chr1:1163345-1164737 REVERSE LENGTH=160 142 5e-35
AT5G43460.1 | chr5:17460007-17461492 FORWARD LENGTH=155 138 1e-33
AT4G14420.1 | chr4:8302171-8303738 REVERSE LENGTH=159 138 1e-33
AT3G23190.1 | chr3:8279445-8280663 FORWARD LENGTH=217 57 6e-09
AT3G23180.1 | chr3:8277131-8278396 FORWARD LENGTH=218 48 2e-06
>AT1G04340.1 | chr1:1163345-1164737 REVERSE LENGTH=160
Length = 159
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 1 MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60
MGF SF GRVLFA+ F+LSA+Q F++FG DGGPAAK L PK + A++S+ G+ +P++
Sbjct: 1 MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGVSLPNL 60
Query: 61 ELKHIVAAMIXXXXXXXXXXXXXXXXXAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120
E+K +V A++ AYLL +L ++P+++DFYNY E +F L T
Sbjct: 61 EVKQVVWAIVALKGLGGLLFVIGNIFGAYLLAVYLVVVSPILYDFYNYGPEDRQFSLLLT 120
Query: 121 KFAQNCALVGALLFFLAMKNS-IPKRQPNRKKAPKPKS 157
+F Q+ AL+GALLFF+ MKNS ++ +K+ PKPK+
Sbjct: 121 EFLQSVALLGALLFFIGMKNSTTSSKRILKKRTPKPKA 158
>AT5G43460.1 | chr5:17460007-17461492 FORWARD LENGTH=155
Length = 154
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
Query: 1 MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60
MGF SF GRVLFA+ F+LSA+Q F+ DGGPAAK L PK + + A++S+R G+ +P I
Sbjct: 1 MGFFSFLGRVLFASLFILSAWQMFN----DGGPAAKELAPKLDLVKAHLSSRLGVTLPKI 56
Query: 61 ELKHIVAAMIXXXXXXXXXXXXXXXXXAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120
E++ +VA +I AYLL +L P+++DFYNY + F L T
Sbjct: 57 EVRQVVATIIALKGVGGLLFVIGNTFGAYLLASYLVVFGPILYDFYNYGPQERHFSLLLT 116
Query: 121 KFAQNCALVGALLFFLAMKNSIPKRQPNRKKAPKPKS 157
+F Q+ AL GALLFF+ MKNS P ++ +K+ PKPK+
Sbjct: 117 EFLQSVALFGALLFFIGMKNSTPAKKNLKKRTPKPKA 153
>AT4G14420.1 | chr4:8302171-8303738 REVERSE LENGTH=159
Length = 158
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 104/158 (65%)
Query: 1 MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60
M SF GR LF + FLLSA+QEF++FG DGG +AK+L+PKFN V +++T TG +P +
Sbjct: 1 MELASFLGRALFVSVFLLSAWQEFNDFGEDGGRSAKSLKPKFNAFVNHVTTHTGQQLPPV 60
Query: 61 ELKHIVAAMIXXXXXXXXXXXXXXXXXAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120
++K +VAA I AYLLL H A TP+++DFYNYD++ EF QLF+
Sbjct: 61 DMKILVAAAIALKGIGGLLFVFGSSLGAYLLLLHQAVATPILYDFYNYDVDRKEFGQLFS 120
Query: 121 KFAQNCALVGALLFFLAMKNSIPKRQPNRKKAPKPKST 158
KF Q+ AL+G LLFF+ MKNS + RKKAPK K+
Sbjct: 121 KFTQSLALLGGLLFFIGMKNSRKHGRQLRKKAPKAKAN 158
>AT3G23190.1 | chr3:8279445-8280663 FORWARD LENGTH=217
Length = 216
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 1 MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60
M +L AGRV+FA+AFL+SA++E+ FG+ AA L+PK
Sbjct: 18 MPYLMPAGRVVFASAFLVSAWREYYGFGL----AADELRPKLGFF-------------EN 60
Query: 61 ELKHIVAAMIXXXXXXXXXXXXXXXXXAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120
+ K IVA I A LLL + A ++P+++DFYN D + F +T
Sbjct: 61 QAKAIVALGILMKFVGGILFIFNTYVGAALLLVYQAILSPILYDFYNRDYDRDHFTVFYT 120
Query: 121 KFAQ 124
KF +
Sbjct: 121 KFKE 124
>AT3G23180.1 | chr3:8277131-8278396 FORWARD LENGTH=218
Length = 217
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 8 GRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHIELKHIVA 67
GR LFA++F LS++ ++ E + PKF ++KH++
Sbjct: 25 GRALFASSFFLSSWHDYMELKANWNGTEDYWSPKFG-------------YSGDQIKHLMT 71
Query: 68 AMIXXXXXXXXXXXXXXXXXAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFTKFAQ 124
I A+LLL + T V HDFYN+ +++ EF L+ K +
Sbjct: 72 VSIIVRTLGGLIFIYGSFFGAFLLLMYQGIATMVHHDFYNHRLDTEEFGLLYLKLKR 128
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,771,728
Number of extensions: 84465
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 5
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)