Os03g0149200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HR-like lesion-inducer family protein.
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Os03g0149200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HR-like lesion-inducer family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.53 | 0.588 | 9.23 | -1.05 | 0.587 | 2.71 | 0.571 | -1.62 | 0.132 | 4.93 | 20.85 | 1396 | -- | -- |
| 156.33 | 0.582 | 9.17 | -0.725 | 0.607 | 2.82 | -0.63 | -- | 0.235 | 7.03 | 20.13 | 2581 | -- | -- |
| 154.33 | 0.579 | 9.22 | -1.08 | 0.587 | 2.8 | -- | -2.01 | 0.133 | 6.86 | 21.67 | 1241 | -- | -- |
| 156.48 | 0.583 | 9.17 | -0.686 | 0.624 | 2.74 | -- | -- | 0.254 | 6.65 | 20.68 | 2580 | -- | -- |
| 171.06 | 0.609 | 9.24 | -1.1 | -- | 2.81 | -- | -1.98 | 0.141 | -- | 21.7 | 1305 | -- | -- |
| 382.5 | 0.917 | 9.03 | 0.4 | 0.757 | -- | 1.19 | -- | 0.887 | 4.03 | -- | -- | -- | -- |
| 385.56 | 0.92 | 9.03 | 0.387 | 0.786 | -- | -- | -- | 0.881 | 4.66 | -- | -- | -- | -- |
| 173.97 | 0.614 | 9.18 | -0.538 | -- | 2.71 | -- | -- | 0.278 | -- | 21.15 | 1300 | -- | -- |
| 166.06 | 0.6 | 9.13 | -- | 0.659 | 2.51 | -- | -- | 0.396 | 6.58 | 21.5 | 2547 | -- | -- |
| 418.39 | 0.956 | 9.03 | 0.417 | -- | -- | -- | -- | 0.901 | -- | -- | -- | -- | -- |
| 389.5 | 0.923 | 9.04 | -- | 0.793 | -- | -- | -- | 0.837 | 4.64 | -- | -- | -- | -- |
| 180.68 | 0.626 | 9.15 | -- | -- | 2.53 | -- | -- | 0.358 | -- | 21.6 | 1306 | -- | -- |
| 422.97 | 0.96 | 9.05 | -- | -- | -- | -- | -- | 0.855 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.76 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 4 | 145.44 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 6 | 145.50 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 36 | 147.98 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 43 | 148.78 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 53 | 148.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 76 | 151.21 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 78 | 151.31 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 80 | 151.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 82 | 152.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 86 | 152.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 89 | 152.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 96 | 152.26 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 105 | 152.49 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 113 | 152.91 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 127 | 152.94 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 130 | 152.95 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 185 | 154.66 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 190 | 154.79 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 220 | 156.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 223 | 156.35 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 255 | 156.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 16 |
| 277 | 157.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 20 |
| 284 | 157.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 303 | 157.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 21 |
| 315 | 157.98 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 327 | 158.18 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 335 | 158.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 336 | 158.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 17 |
| 344 | 158.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 346 | 158.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 376 | 158.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 402 | 158.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 432 | 158.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 21 |
| 444 | 158.68 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 450 | 158.70 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 472 | 158.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 476 | 158.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 478 | 158.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 511 | 159.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 9 |
| 517 | 159.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 7 |
| 562 | 159.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 571 | 159.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 572 | 159.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 655 | 160.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 14 |
| 656 | 160.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 662 | 160.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 17 |
| 668 | 160.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 686 | 160.32 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 718 | 160.52 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 729 | 160.59 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 750 | 160.68 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 761 | 160.72 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 868 | 161.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 900 | 161.51 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 966 | 161.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |