BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0149200 Os03g0149200|J033038D11
(157 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0149200 HR-like lesion-inducer family protein 215 1e-56
Os04g0181100 HR-like lesion-inducer family protein 176 8e-45
Os10g0445500 HR-like lesion-inducer family protein 172 9e-44
>Os03g0149200 HR-like lesion-inducer family protein
Length = 157
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/142 (78%), Positives = 112/142 (78%)
Query: 1 MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60
MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV
Sbjct: 1 MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60
Query: 61 ELKHIVAATXXXXXXXXXXXXXXXXXXAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120
ELKHIVAAT AYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM
Sbjct: 61 ELKHIVAATIGLKGLGGLLFILSSSFGAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120
Query: 121 KFTQNXXXXXXXXXXXXMKNSI 142
KFTQN MKNSI
Sbjct: 121 KFTQNLALFGALLFFLGMKNSI 142
>Os04g0181100 HR-like lesion-inducer family protein
Length = 157
Score = 176 bits (445), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 104/142 (73%)
Query: 1 MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60
MGF+SF GRVLFAS+FLLSAYQEFSEFG DGGPAAKAL+PK+N+FT+ +S LG+AVPH+
Sbjct: 1 MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60
Query: 61 ELKHIVAATXXXXXXXXXXXXXXXXXXAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120
++K ++AAT A+LLL+YLA ITPVVYDFYNY+ME S+FVQLF+
Sbjct: 61 DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120
Query: 121 KFTQNXXXXXXXXXXXXMKNSI 142
KF+QN MKNSI
Sbjct: 121 KFSQNLALFGALLFFLGMKNSI 142
>Os10g0445500 HR-like lesion-inducer family protein
Length = 158
Score = 172 bits (436), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 87/142 (61%), Positives = 97/142 (68%)
Query: 1 MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60
MGF+SFAGRVLFA+ FLLSAYQEFSEFG DGGPAAKAL+PK+N NIS G+ VPH+
Sbjct: 1 MGFLSFAGRVLFAAAFLLSAYQEFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHI 60
Query: 61 ELKHIVAATXXXXXXXXXXXXXXXXXXAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120
ELKHIVAA AYLLL +LAFITPVV+DFYNYD+E +EFVQLF
Sbjct: 61 ELKHIVAAMISLKGLGGLLFILSSSLGAYLLLFHLAFITPVVHDFYNYDIESAEFVQLFT 120
Query: 121 KFTQNXXXXXXXXXXXXMKNSI 142
KF QN MKNSI
Sbjct: 121 KFAQNCALVGALLFFLAMKNSI 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,281,328
Number of extensions: 96511
Number of successful extensions: 203
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)