BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0149200 Os03g0149200|J033038D11
         (157 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14420.1  | chr4:8302171-8303738 REVERSE LENGTH=159            130   3e-31
AT1G04340.1  | chr1:1163345-1164737 REVERSE LENGTH=160            119   5e-28
AT5G43460.1  | chr5:17460007-17461492 FORWARD LENGTH=155          102   7e-23
AT3G23190.1  | chr3:8279445-8280663 FORWARD LENGTH=217             62   2e-10
AT3G23180.1  | chr3:8277131-8278396 FORWARD LENGTH=218             47   4e-06

>AT4G14420.1 | chr4:8302171-8303738 REVERSE LENGTH=159
          Length = 158

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/141 (46%), Positives = 87/141 (61%)

Query: 1   MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60
           M   SF GR LF SVFLLSA+QEF++FG DGG +AK+L+PK+N F  +++ H G  +P V
Sbjct: 1   MELASFLGRALFVSVFLLSAWQEFNDFGEDGGRSAKSLKPKFNAFVNHVTTHTGQQLPPV 60

Query: 61  ELKHIVAATXXXXXXXXXXXXXXXXXXAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120
           ++K +VAA                   AYLLL++ A  TP++YDFYNYD+++ EF QLF 
Sbjct: 61  DMKILVAAAIALKGIGGLLFVFGSSLGAYLLLLHQAVATPILYDFYNYDVDRKEFGQLFS 120

Query: 121 KFTQNXXXXXXXXXXXXMKNS 141
           KFTQ+            MKNS
Sbjct: 121 KFTQSLALLGGLLFFIGMKNS 141



>AT1G04340.1 | chr1:1163345-1164737 REVERSE LENGTH=160
          Length = 159

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 85/141 (60%)

Query: 1   MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60
           MGF SF GRVLFAS+F+LSA+Q F++FG DGGPAAK L PK ++   ++S+ LGV++P++
Sbjct: 1   MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGVSLPNL 60

Query: 61  ELKHIVAATXXXXXXXXXXXXXXXXXXAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120
           E+K +V A                   AYLL +YL  ++P++YDFYNY  E  +F  L  
Sbjct: 61  EVKQVVWAIVALKGLGGLLFVIGNIFGAYLLAVYLVVVSPILYDFYNYGPEDRQFSLLLT 120

Query: 121 KFTQNXXXXXXXXXXXXMKNS 141
           +F Q+            MKNS
Sbjct: 121 EFLQSVALLGALLFFIGMKNS 141



>AT5G43460.1 | chr5:17460007-17461492 FORWARD LENGTH=155
          Length = 154

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 77/141 (54%), Gaps = 4/141 (2%)

Query: 1   MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60
           MGF SF GRVLFAS+F+LSA+Q F+    DGGPAAK L PK ++   ++S+ LGV +P +
Sbjct: 1   MGFFSFLGRVLFASLFILSAWQMFN----DGGPAAKELAPKLDLVKAHLSSRLGVTLPKI 56

Query: 61  ELKHIVAATXXXXXXXXXXXXXXXXXXAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120
           E++ +VA                    AYLL  YL    P++YDFYNY  ++  F  L  
Sbjct: 57  EVRQVVATIIALKGVGGLLFVIGNTFGAYLLASYLVVFGPILYDFYNYGPQERHFSLLLT 116

Query: 121 KFTQNXXXXXXXXXXXXMKNS 141
           +F Q+            MKNS
Sbjct: 117 EFLQSVALFGALLFFIGMKNS 137



>AT3G23190.1 | chr3:8279445-8280663 FORWARD LENGTH=217
          Length = 216

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 1   MGFVSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHV 60
           M ++  AGRV+FAS FL+SA++E+  FG     AA  LRPK   F               
Sbjct: 18  MPYLMPAGRVVFASAFLVSAWREYYGFGL----AADELRPKLGFFEN------------- 60

Query: 61  ELKHIVAATXXXXXXXXXXXXXXXXXXAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFM 120
           + K IVA                    A LLL+Y A ++P++YDFYN D ++  F   + 
Sbjct: 61  QAKAIVALGILMKFVGGILFIFNTYVGAALLLVYQAILSPILYDFYNRDYDRDHFTVFYT 120

Query: 121 KFTQ 124
           KF +
Sbjct: 121 KFKE 124



>AT3G23180.1 | chr3:8277131-8278396 FORWARD LENGTH=218
          Length = 217

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 4   VSFAGRVLFASVFLLSAYQEFSEFGADGGPAAKALRPKYNVFTKNISAHLGVAVPHVELK 63
           V   GR LFAS F LS++ ++ E  A+         PK+                  ++K
Sbjct: 21  VETIGRALFASSFFLSSWHDYMELKANWNGTEDYWSPKF-------------GYSGDQIK 67

Query: 64  HIVAATXXXXXXXXXXXXXXXXXXAYLLLIYLAFITPVVYDFYNYDMEKSEFVQLFMKFT 123
           H++  +                  A+LLL+Y    T V +DFYN+ ++  EF  L++K  
Sbjct: 68  HLMTVSIIVRTLGGLIFIYGSFFGAFLLLMYQGIATMVHHDFYNHRLDTEEFGLLYLKLK 127

Query: 124 Q 124
           +
Sbjct: 128 R 128



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,149,882
Number of extensions: 61542
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 5
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)