BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0181100 Os04g0181100|005-012-C09
(157 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14420.1 | chr4:8302171-8303738 REVERSE LENGTH=159 160 2e-40
AT1G04340.1 | chr1:1163345-1164737 REVERSE LENGTH=160 154 2e-38
AT5G43460.1 | chr5:17460007-17461492 FORWARD LENGTH=155 139 9e-34
AT3G23190.1 | chr3:8279445-8280663 FORWARD LENGTH=217 82 1e-16
AT3G23180.1 | chr3:8277131-8278396 FORWARD LENGTH=218 75 2e-14
AT3G23175.1 | chr3:8274202-8274973 REVERSE LENGTH=170 49 8e-07
>AT4G14420.1 | chr4:8302171-8303738 REVERSE LENGTH=159
Length = 158
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 109/160 (68%), Gaps = 5/160 (3%)
Query: 1 MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60
M SF+GR LF S+FLLSA+QEF++FG DGG +AK+LKPKFN F V+ G +P +
Sbjct: 1 MELASFLGRALFVSVFLLSAWQEFNDFGEDGGRSAKSLKPKFNAFVNHVTTHTGQQLPPV 60
Query: 61 DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120
D+K ++AA + LKG GGLLF+ SS GA+LLLL+ AV TP++YDFYNY+++ +F QLF
Sbjct: 61 DMKILVAAAIALKGIGGLLFVFGSSLGAYLLLLHQAVATPILYDFYNYDVDRKEFGQLFS 120
Query: 121 KFSQNXXXXXXXXXXXXMKNSIPRRHS---KRRAGKTKTN 157
KF+Q+ MKNS R+H +++A K K N
Sbjct: 121 KFTQSLALLGGLLFFIGMKNS--RKHGRQLRKKAPKAKAN 158
>AT1G04340.1 | chr1:1163345-1164737 REVERSE LENGTH=160
Length = 159
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 2/158 (1%)
Query: 1 MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60
MGF SF+GRVLFAS+F+LSA+Q F++FGTDGGPAAK L PK +L +S LG+++P++
Sbjct: 1 MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGVSLPNL 60
Query: 61 DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120
++K V+ A + LKG GGLLF+I + FGA+LL +YL V++P++YDFYNY E QF L
Sbjct: 61 EVKQVVWAIVALKGLGGLLFVIGNIFGAYLLAVYLVVVSPILYDFYNYGPEDRQFSLLLT 120
Query: 121 KFSQNXXXXXXXXXXXXMKNSI--PRRHSKRRAGKTKT 156
+F Q+ MKNS +R K+R K K
Sbjct: 121 EFLQSVALLGALLFFIGMKNSTTSSKRILKKRTPKPKA 158
>AT5G43460.1 | chr5:17460007-17461492 FORWARD LENGTH=155
Length = 154
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 100/157 (63%), Gaps = 5/157 (3%)
Query: 1 MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60
MGF SF+GRVLFAS+F+LSA+Q F+ DGGPAAK L PK +L +S LG+ +P I
Sbjct: 1 MGFFSFLGRVLFASLFILSAWQMFN----DGGPAAKELAPKLDLVKAHLSSRLGVTLPKI 56
Query: 61 DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120
+++ V+A + LKG GGLLF+I ++FGA+LL YL V P++YDFYNY + F L
Sbjct: 57 EVRQVVATIIALKGVGGLLFVIGNTFGAYLLASYLVVFGPILYDFYNYGPQERHFSLLLT 116
Query: 121 KFSQNXXXXXXXXXXXXMKNSIP-RRHSKRRAGKTKT 156
+F Q+ MKNS P +++ K+R K K
Sbjct: 117 EFLQSVALFGALLFFIGMKNSTPAKKNLKKRTPKPKA 153
>AT3G23190.1 | chr3:8279445-8280663 FORWARD LENGTH=217
Length = 216
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 17/124 (13%)
Query: 1 MGFISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHI 60
M ++ GRV+FAS FL+SA++E+ FG AA L+PK F Q
Sbjct: 18 MPYLMPAGRVVFASAFLVSAWREYYGFGL----AADELRPKLGFFENQA----------- 62
Query: 61 DIKTVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFV 120
K ++A + +K GG+LFI ++ GA LLL+Y A+++P++YDFYN + + F +
Sbjct: 63 --KAIVALGILMKFVGGILFIFNTYVGAALLLVYQAILSPILYDFYNRDYDRDHFTVFYT 120
Query: 121 KFSQ 124
KF +
Sbjct: 121 KFKE 124
>AT3G23180.1 | chr3:8277131-8278396 FORWARD LENGTH=218
Length = 217
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 4 ISFVGRVLFASIFLLSAYQEFSEFGTDGGPAAKALKPKFNLFTQQVSKSLGMAVPHIDIK 63
+ +GR LFAS F LS++ ++ E + PKF Q IK
Sbjct: 21 VETIGRALFASSFFLSSWHDYMELKANWNGTEDYWSPKFGYSGDQ-------------IK 67
Query: 64 TVIAATMFLKGFGGLLFIISSSFGAFLLLLYLAVITPVVYDFYNYEMESSQFVQLFVKFS 123
++ ++ ++ GGL+FI S FGAFLLL+Y + T V +DFYN+ +++ +F L++K
Sbjct: 68 HLMTVSIIVRTLGGLIFIYGSFFGAFLLLMYQGIATMVHHDFYNHRLDTEEFGLLYLKLK 127
Query: 124 Q 124
+
Sbjct: 128 R 128
>AT3G23175.1 | chr3:8274202-8274973 REVERSE LENGTH=170
Length = 169
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 1 MGFISFVGRVLFASIFLLSAYQEFSEF--GTDGGPAAKALKPKFNLFTQQVSKSL----G 54
M I+F GR+ F+ +F ++A Q++++ G GGP K + P N+ ++ SK+L G
Sbjct: 20 MPAIAFFGRMAFSFVFFITAIQDYADHYGGGAGGPLEKTMGPAVNMLSKYGSKALTFYFG 79
Query: 55 MAVPHIDIKTVIAATMFLKGFGGLLFIISSSFGAFLLL 92
M V D++ + A + K L FI S A+ LL
Sbjct: 80 MQVVAFDVRLIEFALISAKATAALWFIFGQSIPAYFLL 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,798,724
Number of extensions: 94559
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 6
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)