BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0432300 Os10g0432300|AK108240
         (223 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0432300  Similar to Transcription factor IID, TFIID (Fr...   402   e-113
Os03g0657000  TATA-binding protein TBP2                           363   e-101
Os12g0580300  Similar to TATA-binding protein TBP2                362   e-100

>Os10g0432300 Similar to Transcription factor IID, TFIID (Fragment)
          Length = 223

 Score =  402 bits (1034), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/223 (90%), Positives = 201/223 (90%)

Query: 1   MAAAAVDPMAXXXXXXXXXXXXXXXXXXXXXXPVDLVEHPSGIVPTLQNIVSTVNLDCRL 60
           MAAAAVDPMA                      PVDLVEHPSGIVPTLQNIVSTVNLDCRL
Sbjct: 1   MAAAAVDPMALGLGTSGGGGGGESAVGGDGAEPVDLVEHPSGIVPTLQNIVSTVNLDCRL 60

Query: 61  DLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEDHSKLAARKYA 120
           DLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEDHSKLAARKYA
Sbjct: 61  DLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEDHSKLAARKYA 120

Query: 121 RIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQP 180
           RIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQP
Sbjct: 121 RIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQP 180

Query: 181 KIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRKTQQR 223
           KIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRKTQQR
Sbjct: 181 KIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRKTQQR 223



>Os03g0657000 TATA-binding protein TBP2
          Length = 203

 Score =  363 bits (931), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/190 (91%), Positives = 181/190 (95%)

Query: 33  PVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTT 92
           PVDL +HPSGI+PTLQNIVSTVNLDC+LDLK IALQARNAEYNPKRFAAVIMRIR+PKTT
Sbjct: 14  PVDLAKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 73

Query: 93  ALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 152
           ALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGFPAKFKDFKIQNIVGSCDVKFPIRL
Sbjct: 74  ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 133

Query: 153 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFP 212
           EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK R E Y AFEN++P
Sbjct: 134 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYP 193

Query: 213 VLTEYRKTQQ 222
           VLTE+RK QQ
Sbjct: 194 VLTEFRKVQQ 203



>Os12g0580300 Similar to TATA-binding protein TBP2
          Length = 208

 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/190 (91%), Positives = 181/190 (95%)

Query: 33  PVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTT 92
           PVDLV+HPSGI+PTLQNIVSTVNLDC+LDLK IALQARNAEYNPKRFAAVIMRIR+PKTT
Sbjct: 19  PVDLVKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 78

Query: 93  ALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 152
           ALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGF AKFKDFKIQNIVGSCDVKFPIRL
Sbjct: 79  ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRL 138

Query: 153 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFP 212
           EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK R E Y AFEN++P
Sbjct: 139 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYP 198

Query: 213 VLTEYRKTQQ 222
           VLTE+RK QQ
Sbjct: 199 VLTEFRKVQQ 208



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,014,001
Number of extensions: 211851
Number of successful extensions: 414
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 3
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)