Os10g0432300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor IID, TFIID (Fragment).
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Os10g0432300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor IID, TFIID (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.74 | 0.366 | 5.77 | -0.649 | 0.456 | 0.932 | 1.24 | 0.587 | -0.176 | 14.8 | 24.6 | 11 | -- | -- |
| 61.16 | 0.364 | 5.76 | -0.562 | 0.462 | 0.881 | 1.04 | -- | -0.15 | 14.8 | 24.98 | 11 | -- | -- |
| 64.83 | 0.378 | 5.75 | -0.504 | 0.446 | 0.851 | -- | -0.25 | -0.146 | 14.8 | 24.61 | 11 | -- | -- |
| 64.9 | 0.375 | 5.76 | -0.538 | 0.451 | 0.878 | -- | -- | -0.153 | 14.8 | 24.6 | 11 | -- | -- |
| 74.94 | 0.403 | 5.77 | -0.562 | -- | 0.599 | -- | -0.392 | -0.209 | -- | 24.17 | 28 | -- | -- |
| 72.58 | 0.399 | 5.8 | -0.763 | 0.302 | -- | 1.07 | -- | -0.319 | 15.4 | -- | -- | -- | -- |
| 76.21 | 0.409 | 5.8 | -0.743 | 0.311 | -- | -- | -- | -0.313 | 15.7 | -- | -- | -- | -- |
| 75.15 | 0.406 | 5.77 | -0.616 | -- | 0.63 | -- | -- | -0.22 | -- | 24.1 | 35 | -- | -- |
| 71.85 | 0.395 | 5.74 | -- | 0.498 | 1.08 | -- | -- | -0.0585 | 14.8 | 24.7 | 20 | -- | -- |
| 81.55 | 0.422 | 5.8 | -0.756 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 90.74 | 0.446 | 5.78 | -- | 0.325 | -- | -- | -- | -0.23 | 15.7 | -- | -- | -- | -- |
| 84.14 | 0.427 | 5.75 | -- | -- | 0.874 | -- | -- | -0.12 | -- | 24.1 | 138 | -- | -- |
| 96.61 | 0.459 | 5.78 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.29 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 13 |
| 8 | 56.78 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 36 | 58.00 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 12 |
| 82 | 58.96 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 124 | 59.75 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 133 | 59.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 135 | 59.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 137 | 59.93 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 166 | 60.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 170 | 60.31 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 191 | 60.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 197 | 60.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 208 | 60.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 212 | 60.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 219 | 60.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 227 | 60.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 237 | 60.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 238 | 60.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 241 | 60.73 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 245 | 60.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 248 | 60.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 249 | 60.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 260 | 60.76 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 270 | 60.78 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 279 | 60.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 287 | 60.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 288 | 60.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 295 | 60.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 306 | 60.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 309 | 60.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 350 | 60.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 439 | 61.11 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 17 |
| 456 | 61.13 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 478 | 61.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 481 | 61.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 17 |
| 666 | 61.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 854 | 61.92 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |