Os12g0580300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TATA-binding protein TBP2.
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Os12g0580300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TATA-binding protein TBP2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.81 | 0.285 | 8.45 | 0.217 | 0.442 | -0.237 | -0.585 | -0.708 | 0.0108 | 1.58 | 24.58 | 274 | -- | -- |
| 38.54 | 0.289 | 8.48 | 0.0473 | 0.443 | -0.266 | -0.802 | -- | -0.0748 | 1.74 | 24.8 | 293 | -- | -- |
| 37.95 | 0.287 | 8.45 | 0.251 | 0.474 | -0.236 | -- | -0.811 | 0.0183 | 1.7 | 24.8 | 225 | -- | -- |
| 40.7 | 0.297 | 8.48 | 0.0197 | 0.461 | -0.275 | -- | -- | -0.0687 | 1.75 | 24.6 | 243 | -- | -- |
| 47.27 | 0.32 | 8.44 | 0.203 | -- | -0.364 | -- | -0.738 | 0.0236 | -- | 21.8 | 959 | -- | -- |
| 42.62 | 0.306 | 8.44 | 0.0696 | 0.361 | -- | -0.789 | -- | 0.0708 | 0.809 | -- | -- | -- | -- |
| 45.24 | 0.315 | 8.44 | 0.0993 | 0.363 | -- | -- | -- | 0.0753 | 0.588 | -- | -- | -- | -- |
| 45.05 | 0.313 | 8.47 | -0.0403 | -- | -0.457 | -- | -- | -0.0897 | -- | 24.8 | 920 | -- | -- |
| 40.66 | 0.297 | 8.47 | -- | 0.457 | -0.289 | -- | -- | -0.0737 | 1.84 | 24.6 | 263 | -- | -- |
| 53.49 | 0.342 | 8.43 | 0.112 | -- | -- | -- | -- | 0.0816 | -- | -- | -- | -- | -- |
| 45.5 | 0.316 | 8.44 | -- | 0.364 | -- | -- | -- | 0.0643 | 0.601 | -- | -- | -- | -- |
| 45.09 | 0.313 | 8.47 | -- | -- | -0.449 | -- | -- | -0.0825 | -- | 24.79 | 920 | -- | -- |
| 53.82 | 0.342 | 8.44 | -- | -- | -- | -- | -- | 0.0692 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 2 | 36.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 3 | 36.10 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 4 | 36.10 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 5 | 36.23 | temperature | 25.0 | 720 | > th | dose independent | rect. | 24 | 1 |
| 7 | 36.35 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 9 | 36.37 | temperature | 25.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 13 | 36.41 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 15 | 36.55 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 16 | 36.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 17 | 36.58 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 18 | 36.58 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 21 | 36.59 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 18 |
| 24 | 36.62 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 30 | 36.66 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 35 | 36.68 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 43 | 36.75 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 47 | 36.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 58 | 36.86 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 59 | 36.86 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 71 | 36.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 73 | 36.91 | temperature | 15.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 78 | 36.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 87 | 36.95 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 94 | 36.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 95 | 36.97 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 102 | 36.99 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 103 | 36.99 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 135 | 37.08 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 144 | 37.11 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 150 | 37.12 | temperature | 10.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 161 | 37.14 | temperature | 10.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 170 | 37.14 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 174 | 37.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 175 | 37.16 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 216 | 37.22 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 222 | 37.23 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 228 | 37.24 | temperature | 25.0 | 270 | < th | dose independent | sin | 8 | NA |
| 236 | 37.25 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 242 | 37.26 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 243 | 37.26 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 247 | 37.27 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 259 | 37.28 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 262 | 37.28 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 265 | 37.28 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 267 | 37.29 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 23 |
| 274 | 37.29 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 275 | 37.29 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 307 | 37.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 319 | 37.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 347 | 37.37 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 12 |
| 361 | 37.38 | temperature | 25.0 | 270 | < th | dose independent | no | NA | NA |
| 373 | 37.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 407 | 37.42 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 409 | 37.42 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 419 | 37.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 424 | 37.43 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 427 | 37.43 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 451 | 37.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 454 | 37.45 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 462 | 37.45 | temperature | 30.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 472 | 37.45 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 485 | 37.47 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 486 | 37.47 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 496 | 37.48 | temperature | 25.0 | 270 | > th | dose independent | sin | 7 | NA |
| 523 | 37.50 | temperature | 25.0 | 720 | < th | dose independent | rect. | 23 | 9 |
| 535 | 37.51 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 573 | 37.54 | temperature | 25.0 | 720 | < th | dose independent | sin | 4 | NA |
| 587 | 37.55 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 14 |
| 613 | 37.57 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 643 | 37.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 701 | 37.63 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 756 | 37.67 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 2 |
| 766 | 37.67 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 2 |
| 769 | 37.67 | wind | 7.0 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 778 | 37.68 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 781 | 37.68 | wind | 5.0 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 818 | 37.71 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 831 | 37.71 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 854 | 37.73 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 887 | 37.75 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 903 | 37.76 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 6 |
| 966 | 37.80 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 974 | 37.81 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 976 | 37.81 | wind | 7.0 | 720 | > th | dose independent | rect. | 19 | 15 |