BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0580300 Os12g0580300|AK102871
         (208 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55520.1  | chr1:20726150-20727483 REVERSE LENGTH=201          375   e-105
AT3G13445.1  | chr3:4380317-4381869 FORWARD LENGTH=201            374   e-104

>AT1G55520.1 | chr1:20726150-20727483 REVERSE LENGTH=201
          Length = 200

 Score =  375 bits (963), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/194 (93%), Positives = 187/194 (96%)

Query: 15  EGSEPVDLVKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRE 74
           EGS+PVDL KHPSGI+PTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRE
Sbjct: 7   EGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRE 66

Query: 75  PKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKF 134
           PKTTALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGF AKFKDFKIQNIVGSCDVKF
Sbjct: 67  PKTTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKF 126

Query: 135 PIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFE 194
           PIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+R+ETYTAFE
Sbjct: 127 PIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFE 186

Query: 195 NIYPVLTEFRKVQQ 208
           NIYPVL EFRKVQQ
Sbjct: 187 NIYPVLREFRKVQQ 200



>AT3G13445.1 | chr3:4380317-4381869 FORWARD LENGTH=201
          Length = 200

 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/195 (92%), Positives = 187/195 (95%)

Query: 14  LEGSEPVDLVKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIR 73
           LEGS PVDL KHPSGI+PTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIR
Sbjct: 6   LEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIR 65

Query: 74  EPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVK 133
           EPKTTALIFASGKMVCTGAKSE  SK+AARKYARI+QKLGF AKFKDFKIQNIVGSCDVK
Sbjct: 66  EPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVK 125

Query: 134 FPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAF 193
           FPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+RDETY AF
Sbjct: 126 FPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAF 185

Query: 194 ENIYPVLTEFRKVQQ 208
           ENIYPVL+EFRK+QQ
Sbjct: 186 ENIYPVLSEFRKIQQ 200



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,829,607
Number of extensions: 141582
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)