Os03g0657000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TATA-binding protein TBP2.
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Os03g0657000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TATA-binding protein TBP2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.08 | 0.149 | 11.6 | 0.209 | 0.369 | -0.289 | 0.0134 | -1.04 | 0.198 | 21.4 | 67.99 | 4122 | -- | -- |
| 11.17 | 0.156 | 11.6 | 0.254 | 0.388 | -0.31 | 0.011 | -- | 0.25 | 21.5 | 71.53 | 2644 | -- | -- |
| 10.08 | 0.148 | 11.6 | 0.209 | 0.369 | -0.289 | -- | -1.03 | 0.198 | 21.4 | 67.98 | 4122 | -- | -- |
| 11.14 | 0.155 | 11.6 | 0.26 | 0.384 | -0.332 | -- | -- | 0.258 | 21.6 | 71.85 | 2653 | -- | -- |
| 17.54 | 0.195 | 11.6 | 0.185 | -- | -0.343 | -- | -1.02 | 0.219 | -- | 67.65 | 5910 | -- | -- |
| 14.11 | 0.176 | 11.6 | 0.223 | 0.352 | -- | -0.0762 | -- | 0.216 | 21.1 | -- | -- | -- | -- |
| 14.13 | 0.176 | 11.6 | 0.226 | 0.352 | -- | -- | -- | 0.216 | 21.1 | -- | -- | -- | -- |
| 18.56 | 0.201 | 11.5 | 0.236 | -- | -0.341 | -- | -- | 0.261 | -- | 71.06 | 2963 | -- | -- |
| 12.39 | 0.164 | 11.6 | -- | 0.39 | -0.413 | -- | -- | 0.3 | 20.9 | 72.29 | 7740 | -- | -- |
| 21.29 | 0.216 | 11.6 | 0.227 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 15.47 | 0.184 | 11.6 | -- | 0.352 | -- | -- | -- | 0.191 | 21.1 | -- | -- | -- | -- |
| 19.66 | 0.207 | 11.5 | -- | -- | -0.398 | -- | -- | 0.276 | -- | 71 | 7255 | -- | -- |
| 22.65 | 0.222 | 11.6 | -- | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.21 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 4 |
| 2 | 10.23 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 4 | 10.26 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 5 | 10.29 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 11 |
| 20 | 10.31 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 23 | 10.32 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 22 |
| 26 | 10.33 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 18 | 19 |
| 30 | 10.35 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 35 | 10.36 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 39 | 10.36 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 97 | 10.40 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 110 | 10.40 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 115 | 10.41 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 15 |
| 117 | 10.41 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 119 | 10.41 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 18 | 19 |
| 129 | 10.42 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 139 | 10.43 | humidity | 70.0 | 4320 | < th | dose independent | no | NA | NA |
| 191 | 10.43 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 22 |
| 214 | 10.43 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 15 | 8 |
| 216 | 10.44 | humidity | 70.0 | 4320 | < th | dose independent | sin | 19 | NA |
| 230 | 10.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 17 |
| 231 | 10.44 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 235 | 10.44 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 236 | 10.44 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 238 | 10.44 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 17 |
| 253 | 10.45 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 9 | 9 |
| 302 | 10.46 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 5 |
| 308 | 10.46 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 342 | 10.47 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 355 | 10.48 | humidity | 60.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 387 | 10.49 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 389 | 10.49 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 394 | 10.49 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 420 | 10.49 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 453 | 10.50 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 469 | 10.50 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 523 | 10.51 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 587 | 10.52 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 24 | 19 |
| 599 | 10.52 | humidity | 50.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 666 | 10.53 | humidity | 80.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 762 | 10.54 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 821 | 10.54 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 18 |