BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0419400 Os10g0419400|AK103834
(199 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0419400 Similar to SIPL 417 e-117
Os03g0161800 Similar to SIPL 360 e-100
Os04g0345800 249 8e-67
Os10g0419500 Similar to SIPL 207 4e-54
>Os10g0419400 Similar to SIPL
Length = 199
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MENEFQDGKTEVIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENC 60
MENEFQDGKTEVIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENC
Sbjct: 1 MENEFQDGKTEVIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENC 60
Query: 61 ENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRD 120
ENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRD
Sbjct: 61 ENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRD 120
Query: 121 QNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARK 180
QNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARK
Sbjct: 121 QNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARK 180
Query: 181 EFLAKLLKSEGENQAVEGF 199
EFLAKLLKSEGENQAVEGF
Sbjct: 181 EFLAKLLKSEGENQAVEGF 199
>Os03g0161800 Similar to SIPL
Length = 198
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 167/198 (84%), Positives = 186/198 (93%), Gaps = 1/198 (0%)
Query: 1 MENEFQDGKTEVIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENC 60
MEN+FQDGK EVIEAWYMDDSEEDQRLPHHREPKEFI + KL+ELG++SWRLN D+WEN
Sbjct: 1 MENQFQDGKEEVIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWEND 60
Query: 61 ENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRD 120
ENLK+IREARGYSY+DICDVCPEKLPNYE K+K+FFEEHLHTDEEIRYCLEGSGYFDVRD
Sbjct: 61 ENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRD 120
Query: 121 QNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARK 180
QNDQWIR+A+KKGGMIVLPAGMYHRFTLD+DNYIKAMRLFVG+PVWTPYNRPHDHLPARK
Sbjct: 121 QNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARK 180
Query: 181 EFLAKLLKSEGENQAVEG 198
E++ K++ + G QAVE
Sbjct: 181 EYVEKII-NRGGTQAVEA 197
>Os04g0345800
Length = 294
Score = 249 bits (637), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 115/179 (64%), Positives = 149/179 (83%), Gaps = 3/179 (1%)
Query: 11 EVIEAWYMDD---SEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENCENLKRIR 67
EV++AWYMDD +EEDQRLPH R+P + + + KL +LG+++ RL+ DN E+ ENLK +R
Sbjct: 87 EVVQAWYMDDDDNAEEDQRLPHRRQPDDLLPLAKLLDLGLVAMRLDADNHEHDENLKIMR 146
Query: 68 EARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIR 127
E RGY ++DI ++ PEK+PNYE IK FFEEHLHTDEE+RYCL+GSGYFDVRD+ND+W+R
Sbjct: 147 EQRGYLHMDIVELTPEKMPNYEVMIKRFFEEHLHTDEEVRYCLDGSGYFDVRDENDKWVR 206
Query: 128 IALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKL 186
++++KG +IV+PAG+YHRFTLDT+NYIK MRLF G P WT YNRPHDHLP RK++L L
Sbjct: 207 VSVRKGALIVVPAGIYHRFTLDTNNYIKTMRLFSGGPDWTAYNRPHDHLPERKKYLEAL 265
>Os10g0419500 Similar to SIPL
Length = 184
Score = 207 bits (527), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 131/177 (74%), Gaps = 3/177 (1%)
Query: 15 AWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENCENLKRIREARGYSY 74
W + ++ E++ + P E + + +L E+GV+ W L+P E+ E L +IR RGYSY
Sbjct: 5 VWMLGENGEEKSFEN---PNELLPLSRLEEIGVLYWHLDPKKSESEEELTKIRRERGYSY 61
Query: 75 VDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGG 134
D+ ++CP+KL NYE K+KSF+ EH+H DEEIRYCLEGSGYFDVRD++D+WIRI +K+G
Sbjct: 62 FDLTEICPDKLENYEEKLKSFYCEHIHADEEIRYCLEGSGYFDVRDKDDKWIRIWIKEGD 121
Query: 135 MIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEG 191
MI+LPAG+YHRF +D++NYIK MRLF+G+PVWT YNRP + P R+E++ + G
Sbjct: 122 MIILPAGIYHRFIVDSNNYIKLMRLFIGEPVWTAYNRPQEDHPVRQEYVKNVKGDTG 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,969,436
Number of extensions: 354432
Number of successful extensions: 678
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 4
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)