Os03g0161800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SIPL.
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Os03g0161800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SIPL.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.42 | 0.202 | 13.2 | -0.276 | 0.179 | -0.309 | -0.428 | 0.325 | -0.0615 | 17.8 | 90.09 | 205 | -- | -- |
| 18.8 | 0.202 | 13.2 | -0.252 | 0.178 | -0.3 | -0.609 | -- | -0.0564 | 17.7 | 90.22 | 193 | -- | -- |
| 18.77 | 0.202 | 13.2 | -0.285 | 0.188 | -0.296 | -- | 0.461 | -0.0615 | 17.5 | 90.57 | 205 | -- | -- |
| 19.7 | 0.207 | 13.2 | -0.251 | 0.184 | -0.283 | -- | -- | -0.0552 | 17.8 | 90 | 193 | -- | -- |
| 19.91 | 0.208 | 13.2 | -0.255 | -- | -0.399 | -- | 0.422 | -0.0679 | -- | 91 | 271 | -- | -- |
| 22.61 | 0.223 | 13.2 | -0.293 | 0.368 | -- | -0.419 | -- | 0.0117 | 17.1 | -- | -- | -- | -- |
| 23.04 | 0.225 | 13.2 | -0.293 | 0.365 | -- | -- | -- | 0.00977 | 17 | -- | -- | -- | -- |
| 20.66 | 0.212 | 13.2 | -0.228 | -- | -0.393 | -- | -- | -0.0694 | -- | 90.91 | 277 | -- | -- |
| 21.24 | 0.215 | 13.2 | -- | 0.153 | -0.326 | -- | -- | -0.0273 | 17 | 90.71 | 278 | -- | -- |
| 30.04 | 0.256 | 13.2 | -0.306 | -- | -- | -- | -- | 0.00044 | -- | -- | -- | -- | -- |
| 25.31 | 0.235 | 13.2 | -- | 0.37 | -- | -- | -- | 0.0424 | 17 | -- | -- | -- | -- |
| 22.02 | 0.219 | 13.2 | -- | -- | -0.415 | -- | -- | -0.0479 | -- | 90.1 | 284 | -- | -- |
| 32.52 | 0.266 | 13.2 | -- | -- | -- | -- | -- | 0.0344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.82 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 2 | 17.87 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 3 | 17.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 4 | 17.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 7 | 17.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 8 | 17.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 11 | 17.97 | humidity | 90 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 15 | 18.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 18 | 18.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 19 | 18.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 25 | 18.10 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 35 | 18.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 37 | 18.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 54 | 18.17 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 60 | 18.18 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 79 | 18.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 89 | 18.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 177 | 18.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 210 | 18.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 299 | 18.45 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 311 | 18.46 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 352 | 18.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 384 | 18.49 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 406 | 18.50 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 446 | 18.52 | humidity | 90 | 270 | > th | dose independent | rect. | 16 | 20 |
| 452 | 18.52 | humidity | 90 | 270 | > th | dose independent | rect. | 3 | 23 |
| 474 | 18.53 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 22 |
| 542 | 18.56 | humidity | 90 | 270 | > th | dose independent | rect. | 5 | 23 |
| 571 | 18.57 | humidity | 90 | 270 | > th | dose independent | rect. | 20 | 23 |
| 612 | 18.58 | humidity | 90 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 620 | 18.59 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 621 | 18.59 | humidity | 90 | 270 | > th | dose independent | no | NA | NA |
| 648 | 18.59 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 700 | 18.61 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 778 | 18.62 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 816 | 18.62 | humidity | 90 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 834 | 18.63 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 20 |
| 908 | 18.66 | wind | 7 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 919 | 18.66 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 935 | 18.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 983 | 18.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 21 |