BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0161800 Os03g0161800|AK099497
(198 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14716.1 | chr4:8430484-8431867 REVERSE LENGTH=193 331 1e-91
AT4G14710.5 | chr4:8424897-8426174 REVERSE LENGTH=202 331 1e-91
AT2G26400.1 | chr2:11232058-11233274 REVERSE LENGTH=200 308 1e-84
AT5G43850.1 | chr5:17627364-17629122 REVERSE LENGTH=188 266 4e-72
>AT4G14716.1 | chr4:8430484-8431867 REVERSE LENGTH=193
Length = 192
Score = 331 bits (849), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 149/187 (79%), Positives = 173/187 (92%)
Query: 1 MENQFQDGKEEVIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWEND 60
M +DG+EEVI+AWYMDDSEEDQRLPHH++PKEF+ L KL+ELG+LSWRL+AD++E D
Sbjct: 1 MGEAVKDGREEVIQAWYMDDSEEDQRLPHHKDPKEFVSLDKLAELGVLSWRLDADNYETD 60
Query: 61 ENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRD 120
E+LKKIRE+RGYSYMD C+VCPEKLPNYE K+K+FFEEHLHTDEEIRYC+ G+GYFDVRD
Sbjct: 61 EDLKKIRESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGTGYFDVRD 120
Query: 121 QNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARK 180
+N+ WIRV VKKGGMIVLPAG+YHRFT+DSDNYIKAMRLFVGEPVWTPYNRPHDHLPARK
Sbjct: 121 RNEAWIRVLVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARK 180
Query: 181 EYVEKII 187
EYV+ +
Sbjct: 181 EYVDNFM 187
>AT4G14710.5 | chr4:8424897-8426174 REVERSE LENGTH=202
Length = 201
Score = 331 bits (849), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 152/193 (78%), Positives = 175/193 (90%), Gaps = 2/193 (1%)
Query: 7 DGKEEVIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWENDENLKKI 66
DG+EEVI+AWYMDDSEEDQRLPHH++PKEF+ L KL+ELG+LSWRL+AD++E DE+LKKI
Sbjct: 9 DGREEVIQAWYMDDSEEDQRLPHHKDPKEFLSLDKLAELGVLSWRLDADNYETDEDLKKI 68
Query: 67 REARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWI 126
RE+RGYSYMD C+VCPEKLPNYE K+K+FFEEHLHTDEEIRYC+ GSGYFDVRD+N+ WI
Sbjct: 69 RESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWI 128
Query: 127 RVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKI 186
RV VKKGGMIVLPAG+YHRFT+DSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEY++
Sbjct: 129 RVWVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYIDNF 188
Query: 187 --INRGGTQAVEA 197
+N GG A
Sbjct: 189 VKVNEGGVIDASA 201
>AT2G26400.1 | chr2:11232058-11233274 REVERSE LENGTH=200
Length = 199
Score = 308 bits (789), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 140/197 (71%), Positives = 168/197 (85%)
Query: 1 MENQFQDGKEEVIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWEND 60
M +D EEVI+AWY+D+ EEDQ+LPHH++PKEF+ L KL+ELG+L WRL+AD++E D
Sbjct: 1 MGEAAKDQTEEVIQAWYLDNKEEDQKLPHHKDPKEFVSLDKLAELGVLCWRLDADNYETD 60
Query: 61 ENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRD 120
E LK+IRE+RGYSYMD+C+VCPEKLPNYE K+K FFEEHLH DEEIRYCL GSGYFDVRD
Sbjct: 61 EELKRIRESRGYSYMDLCEVCPEKLPNYEEKVKMFFEEHLHIDEEIRYCLAGSGYFDVRD 120
Query: 121 QNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARK 180
ND WIRV VKKGG+IV PAG+YHRFT+DSDNY+KAMRLFVG PVWT YNRPHDHLPARK
Sbjct: 121 LNDIWIRVWVKKGGLIVFPAGIYHRFTVDSDNYMKAMRLFVGGPVWTAYNRPHDHLPARK 180
Query: 181 EYVEKIINRGGTQAVEA 197
Y++K + G + ++A
Sbjct: 181 AYMKKFLKVIGDRNIDA 197
>AT5G43850.1 | chr5:17627364-17629122 REVERSE LENGTH=188
Length = 187
Score = 266 bits (681), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 119/180 (66%), Positives = 146/180 (81%)
Query: 12 VIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWENDENLKKIREARG 71
+EAW+MDDS EDQRLPHHR PKE + L L+ELG+L W+LN +++END L KIRE RG
Sbjct: 2 ALEAWFMDDSNEDQRLPHHRNPKELVSLDYLAELGVLYWKLNPENYENDSELSKIREDRG 61
Query: 72 YSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVK 131
Y YMD+ D+CPEK+ NYE KLKNFF EH+H DEEIRYCL GSGYFDVRD++D+WIR+ ++
Sbjct: 62 YDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWMQ 121
Query: 132 KGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINRGG 191
G +IVLPAG+YHRFTLD+ NYIK MRLFVGEPVWTPYNRP + P RK+Y+ + + G
Sbjct: 122 PGDLIVLPAGIYHRFTLDASNYIKLMRLFVGEPVWTPYNRPQEEHPVRKKYIHGLTYKFG 181
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,145,833
Number of extensions: 234841
Number of successful extensions: 569
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 4
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)