Os10g0419500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SIPL.
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Os10g0419500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SIPL.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.33 | 0.365 | 13.6 | -0.961 | 2.62 | 0.482 | 1.57 | -1.04 | -0.705 | 9.06 | 10.81 | 1428 | -- | -- |
| 62.05 | 0.367 | 13.6 | -0.806 | 2.62 | 0.46 | 1.58 | -- | -0.644 | 9.09 | 10.48 | 1399 | -- | -- |
| 66.58 | 0.38 | 13.6 | -0.817 | 2.7 | 0.443 | -- | -1.46 | -0.663 | 9.06 | 15.49 | 1243 | -- | -- |
| 70.88 | 0.392 | 13.6 | -0.696 | 2.66 | 0.432 | -- | -- | -0.619 | 9.05 | 12.84 | 1358 | -- | -- |
| 357.88 | 0.886 | 13.6 | -0.689 | -- | 1.07 | -- | 0.767 | -0.42 | -- | 15.49 | 1243 | -- | -- |
| 68.42 | 0.388 | 13.5 | -0.66 | 2.61 | -- | 1.56 | -- | -0.505 | 9.03 | -- | -- | -- | -- |
| 76.79 | 0.41 | 13.5 | -0.607 | 2.6 | -- | -- | -- | -0.504 | 9.02 | -- | -- | -- | -- |
| 335.42 | 0.857 | 13.6 | -0.668 | -- | 1.17 | -- | -- | -0.485 | -- | 12.84 | 1358 | -- | -- |
| 80.11 | 0.417 | 13.6 | -- | 2.65 | 0.38 | -- | -- | -0.56 | 9.03 | 9.413 | 24144 | -- | -- |
| 466.01 | 1.01 | 13.6 | -0.611 | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
| 86.49 | 0.435 | 13.5 | -- | 2.6 | -- | -- | -- | -0.436 | 9.04 | -- | -- | -- | -- |
| 331.47 | 0.851 | 13.6 | -- | -- | 1.18 | -- | -- | -0.332 | -- | 9.413 | 24144 | -- | -- |
| 475.85 | 1.02 | 13.6 | -- | -- | -- | -- | -- | -0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.08 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 2 | 58.12 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 8 |
| 7 | 58.42 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 10 | 58.59 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 13 | 58.72 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 22 | 59.05 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 34 | 59.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 66 | 59.67 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 71 | 59.69 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 72 | 59.69 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 103 | 59.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 109 | 59.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 114 | 59.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 132 | 60.01 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 139 | 60.02 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 148 | 60.02 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 153 | 60.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 188 | 60.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 189 | 60.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 197 | 60.11 | radiation | 20 | 1440 | < th | dose dependent | sin | 22 | NA |
| 199 | 60.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 204 | 60.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 277 | 60.25 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 279 | 60.25 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 280 | 60.25 | radiation | 20 | 1440 | < th | dose dependent | rect. | 21 | 19 |
| 282 | 60.26 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 6 |
| 326 | 60.29 | humidity | 50 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 335 | 60.31 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 378 | 60.35 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 379 | 60.35 | radiation | 10 | 1440 | < th | dose independent | sin | 18 | NA |
| 441 | 60.41 | humidity | 70 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 454 | 60.43 | humidity | 70 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 493 | 60.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 495 | 60.53 | radiation | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 506 | 60.55 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 508 | 60.55 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 661 | 60.66 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 828 | 60.73 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 935 | 60.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 942 | 60.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 943 | 60.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 17 |