BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0419500 Os10g0419500|AK071316
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43850.1 | chr5:17627364-17629122 REVERSE LENGTH=188 247 3e-66
AT4G14710.5 | chr4:8424897-8426174 REVERSE LENGTH=202 223 3e-59
AT4G14716.1 | chr4:8430484-8431867 REVERSE LENGTH=193 218 2e-57
AT2G26400.1 | chr2:11232058-11233274 REVERSE LENGTH=200 217 3e-57
>AT5G43850.1 | chr5:17627364-17629122 REVERSE LENGTH=188
Length = 187
Score = 247 bits (630), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 112/187 (59%), Positives = 146/187 (78%), Gaps = 3/187 (1%)
Query: 1 MAHLVWMLGENGEEKSF---ENPNELLPLSRLEEIGVLYWHLDPKKSESEEELTKIRRER 57
MA W + ++ E++ NP EL+ L L E+GVLYW L+P+ E++ EL+KIR +R
Sbjct: 1 MALEAWFMDDSNEDQRLPHHRNPKELVSLDYLAELGVLYWKLNPENYENDSELSKIREDR 60
Query: 58 GYSYFDLTEICPDKLENYEEKLKSFYCEHIHADEEIRYCLEGSGYFDVRDKDDKWIRIWI 117
GY Y DL ++CP+K+ NYEEKLK+F+ EHIH DEEIRYCL GSGYFDVRDKDD+WIRIW+
Sbjct: 61 GYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWM 120
Query: 118 KEGDMIILPAGIYHRFIVDSNNYIKLMRLFIGEPVWTAYNRPQEDHPVRQEYVKNVKGDT 177
+ GD+I+LPAGIYHRF +D++NYIKLMRLF+GEPVWT YNRPQE+HPVR++Y+ +
Sbjct: 121 QPGDLIVLPAGIYHRFTLDASNYIKLMRLFVGEPVWTPYNRPQEEHPVRKKYIHGLTYKF 180
Query: 178 GFALAAH 184
G + AH
Sbjct: 181 GETVKAH 187
>AT4G14710.5 | chr4:8424897-8426174 REVERSE LENGTH=202
Length = 201
Score = 223 bits (569), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 104/183 (56%), Positives = 136/183 (74%), Gaps = 4/183 (2%)
Query: 5 VWMLGENGEEKSF---ENPNELLPLSRLEEIGVLYWHLDPKKSESEEELTKIRRERGYSY 61
W + ++ E++ ++P E L L +L E+GVL W LD E++E+L KIR RGYSY
Sbjct: 17 AWYMDDSEEDQRLPHHKDPKEFLSLDKLAELGVLSWRLDADNYETDEDLKKIRESRGYSY 76
Query: 62 FDLTEICPDKLENYEEKLKSFYCEHIHADEEIRYCLEGSGYFDVRDKDDKWIRIWIKEGD 121
D E+CP+KL NYE K+KSF+ EH+H DEEIRYC+ GSGYFDVRD+++ WIR+W+K+G
Sbjct: 77 MDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVKKGG 136
Query: 122 MIILPAGIYHRFIVDSNNYIKLMRLFIGEPVWTAYNRPQEDHPVRQEYVKN-VKGDTGFA 180
MI+LPAGIYHRF VDS+NYIK MRLF+GEPVWT YNRP + P R+EY+ N VK + G
Sbjct: 137 MIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYIDNFVKVNEGGV 196
Query: 181 LAA 183
+ A
Sbjct: 197 IDA 199
>AT4G14716.1 | chr4:8430484-8431867 REVERSE LENGTH=193
Length = 192
Score = 218 bits (554), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/171 (57%), Positives = 129/171 (75%), Gaps = 3/171 (1%)
Query: 5 VWMLGENGEEKSF---ENPNELLPLSRLEEIGVLYWHLDPKKSESEEELTKIRRERGYSY 61
W + ++ E++ ++P E + L +L E+GVL W LD E++E+L KIR RGYSY
Sbjct: 15 AWYMDDSEEDQRLPHHKDPKEFVSLDKLAELGVLSWRLDADNYETDEDLKKIRESRGYSY 74
Query: 62 FDLTEICPDKLENYEEKLKSFYCEHIHADEEIRYCLEGSGYFDVRDKDDKWIRIWIKEGD 121
D E+CP+KL NYE K+KSF+ EH+H DEEIRYC+ G+GYFDVRD+++ WIR+ +K+G
Sbjct: 75 MDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGTGYFDVRDRNEAWIRVLVKKGG 134
Query: 122 MIILPAGIYHRFIVDSNNYIKLMRLFIGEPVWTAYNRPQEDHPVRQEYVKN 172
MI+LPAGIYHRF VDS+NYIK MRLF+GEPVWT YNRP + P R+EYV N
Sbjct: 135 MIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVDN 185
>AT2G26400.1 | chr2:11232058-11233274 REVERSE LENGTH=200
Length = 199
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/185 (55%), Positives = 131/185 (70%), Gaps = 6/185 (3%)
Query: 5 VWMLGENGEEKSF---ENPNELLPLSRLEEIGVLYWHLDPKKSESEEELTKIRRERGYSY 61
W L E++ ++P E + L +L E+GVL W LD E++EEL +IR RGYSY
Sbjct: 15 AWYLDNKEEDQKLPHHKDPKEFVSLDKLAELGVLCWRLDADNYETDEELKRIRESRGYSY 74
Query: 62 FDLTEICPDKLENYEEKLKSFYCEHIHADEEIRYCLEGSGYFDVRDKDDKWIRIWIKEGD 121
DL E+CP+KL NYEEK+K F+ EH+H DEEIRYCL GSGYFDVRD +D WIR+W+K+G
Sbjct: 75 MDLCEVCPEKLPNYEEKVKMFFEEHLHIDEEIRYCLAGSGYFDVRDLNDIWIRVWVKKGG 134
Query: 122 MIILPAGIYHRFIVDSNNYIKLMRLFIGEPVWTAYNRPQEDHPVRQEYVK---NVKGDTG 178
+I+ PAGIYHRF VDS+NY+K MRLF+G PVWTAYNRP + P R+ Y+K V GD
Sbjct: 135 LIVFPAGIYHRFTVDSDNYMKAMRLFVGGPVWTAYNRPHDHLPARKAYMKKFLKVIGDRN 194
Query: 179 FALAA 183
+A
Sbjct: 195 IDASA 199
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,854,876
Number of extensions: 222834
Number of successful extensions: 539
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 4
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)