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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0419400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SIPL.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.92 (0.0753) R2 : 0.451
β1 : -0.262 (0.274) R2dD : 0.00117 R2D : 0.000365
β2 : 2.1 (0.179) R2dC : 0.168 R2C : 0.203
β3 : -2.13 (0.287) R2dE : 0.0715 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.1 (1.22) R2dD*E : 0.154 R2D*E : 0.191
γ1 : 0.118 (0.162) R2dN8 : 0.00081 R2N8 : -0.00663
σ : 1.37
deviance : 869.96
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_____
C
peak time of C : 2.03
E
wheather : wind
threshold : 8.984
memory length : 4325
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17
open length of G : 3.31

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
878.28 1.39 5.92 -0.342 2.14 -1.86 -0.348 12.7 0.068 2.13 8.988 4324 17 3.36
1107.25 1.55 5.92 -0.342 2.35 -1.86 -0.348 -- 0.068 2.13 8.988 4324 17 3.36
869.96 1.37 5.92 -0.262 2.1 -2.13 -- 13.1 0.118 2.03 8.984 4325 17 3.31
1042.7 1.5 5.91 -0.079 2.3 -2.25 -- -- 0.0754 2.03 6.503 4321 17.1 4.92
1130.35 1.57 5.89 -0.112 -- -2.52 -- 14.6 0.203 -- 8.987 4326 17 3.58
1208.38 1.63 6.14 -0.896 2.42 -- -2.03 -- -0.447 2.62 -- -- -- --
1221.77 1.64 6.14 -0.844 2.4 -- -- -- -0.433 2.39 -- -- -- --
1214.51 1.62 5.88 0.854 -- -3.86 -- -- 0.0716 -- 7.1 4344 16.8 3.08
1029.07 1.49 5.91 -- 2.32 -3.09 -- -- 0.108 2.13 6.524 4339 17.1 5.09
1563.44 1.85 6.12 -0.742 -- -- -- -- -0.374 -- -- -- -- --
1240.53 1.65 6.12 -- 2.39 -- -- -- -0.339 2.38 -- -- -- --
1212.79 1.62 5.88 -- -- -4.28 -- -- 0.0988 -- 7.2 4351 16.8 3.07
1577.96 1.85 6.1 -- -- -- -- -- -0.292 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 904.78 wind 9 4320 < th dose independent rect. 17 4
2 909.35 wind 7 4320 > th dose independent rect. 17 4
4 910.57 wind 7 4320 > th dose dependent rect. 17 4
6 911.73 wind 9 4320 > th dose independent rect. 17 1
24 923.29 humidity 70 720 > th dose independent rect. 17 14
42 927.90 wind 9 4320 < th dose independent rect. 17 8
85 936.22 humidity 70 720 > th dose independent rect. 18 9
97 938.32 humidity 70 720 > th dose independent sin 12 NA
119 941.63 radiation 1 14400 < th dose dependent rect. 19 10
122 941.79 humidity 70 720 > th dose independent rect. 16 5
139 945.05 radiation 1 14400 < th dose dependent rect. 22 7
192 949.97 humidity 70 720 > th dose dependent rect. 19 2
198 951.00 radiation 1 1440 > th dose dependent rect. 11 4
223 953.98 radiation 10 1440 > th dose dependent rect. 11 22
224 954.05 humidity 70 720 < th dose independent sin 12 NA
236 955.21 humidity 70 720 < th dose independent rect. 17 14
249 955.97 humidity 80 720 < th dose dependent rect. 17 14
251 956.17 radiation 30 1440 < th dose dependent rect. 11 22
252 956.26 humidity 80 720 < th dose dependent rect. 17 8
261 956.65 humidity 70 720 < th dose independent rect. 17 3
282 957.37 humidity 80 720 < th dose dependent rect. 17 4
296 957.94 radiation 1 1440 > th dose dependent rect. 11 7
337 959.35 radiation 20 1440 < th dose independent rect. 11 22
342 959.63 radiation 40 1440 < th dose dependent rect. 11 4
348 960.08 wind 9 43200 < th dose independent rect. 12 1
357 960.60 radiation 1 14400 < th dose dependent rect. 3 2
365 961.32 radiation 20 1440 < th dose dependent rect. 11 1
370 961.59 radiation 20 1440 > th dose independent rect. 11 22
374 962.00 radiation 1 1440 > th dose dependent sin 21 NA
382 962.31 wind 9 43200 > th dose independent rect. 15 2
408 963.27 radiation 40 1440 > th dose dependent rect. 13 20
411 963.40 radiation 40 1440 < th dose dependent rect. 11 7
416 963.72 radiation 1 1440 > th dose dependent rect. 8 7
427 963.89 radiation 20 1440 < th dose independent rect. 11 5
433 964.03 radiation 40 1440 < th dose dependent rect. 11 13
446 964.25 radiation 40 1440 < th dose dependent rect. 11 16
463 964.75 radiation 1 1440 > th dose dependent rect. 8 10
487 965.07 wind 5 4320 < th dose independent rect. 24 1
506 965.23 radiation 20 1440 < th dose dependent sin 22 NA
529 965.60 radiation 20 1440 < th dose independent rect. 11 2
548 965.97 radiation 20 1440 < th dose independent rect. 11 13
554 966.09 wind 9 43200 > th dose dependent rect. 14 3
555 966.13 radiation 20 1440 < th dose independent rect. 11 16
557 966.16 radiation 20 1440 < th dose independent rect. 11 18
596 966.55 radiation 30 1440 < th dose dependent rect. 7 11
625 966.74 wind 7 4320 > th dose independent sin 14 NA
630 966.86 radiation 30 1440 < th dose dependent rect. 7 17
646 967.01 wind 9 43200 > th dose dependent rect. 11 2
651 967.03 radiation 30 1440 < th dose dependent rect. 7 20
663 967.30 radiation 1 1440 > th dose dependent rect. 16 23
692 967.61 wind 9 43200 > th dose dependent rect. 15 1
717 967.81 radiation 40 1440 > th dose dependent sin 13 NA
738 967.99 wind 9 43200 > th dose independent rect. 12 1
748 968.10 radiation 1 1440 > th dose dependent no NA NA
840 968.35 wind 7 4320 < th dose independent sin 14 NA
873 968.51 radiation 40 1440 < th dose dependent rect. 8 7
967 969.28 wind 5 4320 > th dose independent rect. 24 1
968 969.30 wind 3 4320 > th dose dependent rect. 24 1