BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0204400 Os10g0204400|AK103839
(637 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0204400 Similar to Phosphoenolpyruvate carboxykinase (... 1273 0.0
Os03g0255500 Similar to Phosphoenolpyruvate carboxykinase 4... 1014 0.0
AK109774 542 e-154
Os10g0204300 Similar to Phosphoenolpyruvate carboxykinase 80 4e-15
>Os10g0204400 Similar to Phosphoenolpyruvate carboxykinase (Fragment)
Length = 637
Score = 1273 bits (3295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/637 (95%), Positives = 610/637 (95%)
Query: 1 MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVVEDRHRXXX 60
MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVVEDRHR
Sbjct: 1 MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVVEDRHRLQL 60
Query: 61 XXXXXXXXXMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHITVPTITVSDSDLKFTHVLY 120
MTCGIGPKLVNGDPARKKEMAGKAVTHHQHHITVPTITVSDSDLKFTHVLY
Sbjct: 61 QSISASLASMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHITVPTITVSDSDLKFTHVLY 120
Query: 121 NLSPSELYEHAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTDDLWWGKGSPN 180
NLSPSELYEHAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTDDLWWGKGSPN
Sbjct: 121 NLSPSELYEHAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTDDLWWGKGSPN 180
Query: 181 IEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIKVRIISARAYHSLFMHNMCI 240
IEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIKVRIISARAYHSLFMHNMCI
Sbjct: 181 IEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIKVRIISARAYHSLFMHNMCI 240
Query: 241 RPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRREMVILGTQYAGEMKK 300
RPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRREMVILGTQYAGEMKK
Sbjct: 241 RPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRREMVILGTQYAGEMKK 300
Query: 301 GLFSVMHYLMPKKQILSLHSGCNMGRGGDVAXXXXXXXXXXXXXXXDRNRILIGDDEHCW 360
GLFSVMHYLMPKKQILSLHSGCNMGRGGDVA DRNRILIGDDEHCW
Sbjct: 301 GLFSVMHYLMPKKQILSLHSGCNMGRGGDVALFFGLSGTGKTTLSTDRNRILIGDDEHCW 360
Query: 361 SDNGISNIEGGCYAKCIDLSQEKEPDIWDAIKFGTVLENVVFDEHSREVDYTEKSVTENT 420
SDNGISNIEGGCYAKCIDLSQEKEPDIWDAIKFGTVLENVVFDEHSREVDYTEKSVTENT
Sbjct: 361 SDNGISNIEGGCYAKCIDLSQEKEPDIWDAIKFGTVLENVVFDEHSREVDYTEKSVTENT 420
Query: 421 RAAYPIEYIANAKIPCVGPHPKNVILLACDAFGVLPPVSKLSHAQTMYHFISGYTALVAG 480
RAAYPIEYIANAKIPCVGPHPKNVILLACDAFGVLPPVSKLSHAQTMYHFISGYTALVAG
Sbjct: 421 RAAYPIEYIANAKIPCVGPHPKNVILLACDAFGVLPPVSKLSHAQTMYHFISGYTALVAG 480
Query: 481 TEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKHGATGWLVNTGWIGGSYGVGER 540
TEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKHGATGWLVNTGWIGGSYGVGER
Sbjct: 481 TEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKHGATGWLVNTGWIGGSYGVGER 540
Query: 541 ISLAYTRKIIDAIHSGELLARSYKKTDVFGLDIPTKVEGVPSELLDPINTWEDKDSYKLT 600
ISLAYTRKIIDAIHSGELLARSYKKTDVFGLDIPTKVEGVPSELLDPINTWEDKDSYKLT
Sbjct: 541 ISLAYTRKIIDAIHSGELLARSYKKTDVFGLDIPTKVEGVPSELLDPINTWEDKDSYKLT 600
Query: 601 LLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAGPNF 637
LLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAGPNF
Sbjct: 601 LLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAGPNF 637
>Os03g0255500 Similar to Phosphoenolpyruvate carboxykinase 4 (EC 4.1.1.49)
(Fragment)
Length = 663
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/663 (73%), Positives = 536/663 (80%), Gaps = 26/663 (3%)
Query: 1 MMEAKDGQAWLGTNGYGSRREEDGVCHDDSATPVRANTVDELHSLQRKPQVV-------- 52
M +G A + T+G +++ E+G+CHDDS+ PVRA T+DELHSLQRK
Sbjct: 1 MASTPNGLARIETHGAKTKKHENGICHDDSSAPVRAQTIDELHSLQRKRSAPTTPIKDGA 60
Query: 53 ----------EDRHRXXXXXXXXXXXXMTCGIGPKLVNGDPARKKEMAGKAVTHHQHHIT 102
E+R R +T GPK+V GDPARK E A K
Sbjct: 61 SSPFAAALSEEERQRQQLQSISASLASLTRETGPKVVRGDPARKGEAAAKGAPSPHPQPV 120
Query: 103 VPT-------ITVSDSDLKFTHVLYNLSPSELYEHAIKYEKGSFITSSGALATLSGAKTG 155
I VSDS LKFTHVLYNLSP+ELYE AIKYEKGSFITS+GALATLSGAKTG
Sbjct: 121 HHHHPHVTPTIAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTG 180
Query: 156 RSPRDKRVVKDETT-DDLWWGKGSPNIEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNW 214
RSPRDKR+VKDE + +LWWGKGSPNIEMDE TFL NRERAVDYLNSLDKVFVNDQFLNW
Sbjct: 181 RSPRDKRIVKDEASAQELWWGKGSPNIEMDEHTFLTNRERAVDYLNSLDKVFVNDQFLNW 240
Query: 215 DPNNRIKVRIISARAYHSLFMHNMCIRPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTS 274
D NRIKVRIISARAYHSLFMHNMCIRPT EELE FG PDFTIYNAGQFPCNRYTHYMTS
Sbjct: 241 DTENRIKVRIISARAYHSLFMHNMCIRPTEEELEEFGTPDFTIYNAGQFPCNRYTHYMTS 300
Query: 275 STSIDLNLKRREMVILGTQYAGEMKKGLFSVMHYLMPKKQILSLHSGCNMGRGGDVAXXX 334
STS+D+NL RREMVILGTQYAGEMKKGLF VMHYLMP++ ILSLHSGCNMG+ GDVA
Sbjct: 301 STSVDINLARREMVILGTQYAGEMKKGLFGVMHYLMPRRGILSLHSGCNMGKQGDVALFF 360
Query: 335 XXXXXXXXXXXXDRNRILIGDDEHCWSDNGISNIEGGCYAKCIDLSQEKEPDIWDAIKFG 394
D NR+LIGDDEHCWSD G+SNIEGGCYAKCIDLSQEKEPDIW+AIKFG
Sbjct: 361 GLSGTGKTTLSTDHNRLLIGDDEHCWSDTGVSNIEGGCYAKCIDLSQEKEPDIWNAIKFG 420
Query: 395 TVLENVVFDEHSREVDYTEKSVTENTRAAYPIEYIANAKIPCVGPHPKNVILLACDAFGV 454
TVLENVVFDEH+REVDYT+KSVTENTRAAYPIEYI NAKIPCVGPHPKNVILLACDAFGV
Sbjct: 421 TVLENVVFDEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGV 480
Query: 455 LPPVSKLSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTRYAAMLAD 514
LPPVSKL+ QTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPT+YAAMLA+
Sbjct: 481 LPPVSKLNLPQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAE 540
Query: 515 KMNKHGATGWLVNTGWIGGSYGVGERISLAYTRKIIDAIHSGELLARSYKKTDVFGLDIP 574
KM K+GATGWLVNTGW GG YGVG+RI L YTRKIIDAIHSGELL +YKKT+VFGL+IP
Sbjct: 541 KMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYKKTEVFGLEIP 600
Query: 575 TKVEGVPSELLDPINTWEDKDSYKLTLLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAG 634
T+++G+PSE+LDPINTW DK +YK TLLKL+ LFK+NF+VFANYK GG S L D+I AAG
Sbjct: 601 TEIDGIPSEILDPINTWTDKGAYKETLLKLAGLFKKNFEVFANYKIGGDSSLTDKILAAG 660
Query: 635 PNF 637
PNF
Sbjct: 661 PNF 663
>AK109774
Length = 469
Score = 542 bits (1396), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/477 (55%), Positives = 338/477 (70%), Gaps = 14/477 (2%)
Query: 163 VVKDETTD-DLWWGKGSPNIEMDEQTFLINRERAVDYLNSLDKVFVNDQFLNWDPNNRIK 221
+V++E+++ D+WWG N M + + INRERAVDYLN+ ++++V D F WD RI+
Sbjct: 1 IVQEESSEKDVWWG--PVNKPMTQDVWRINRERAVDYLNTRNRIYVVDGFAGWDERYRIR 58
Query: 222 VRIISARAYHSLFMHNMCIRPTYEELENFGEPDFTIYNAGQFPCNRYTHYMTSSTSIDLN 281
VR++ ARAYH+LFM NM IRP+ EELE+F PD+ IYNAG FP NR+T MTS+TS+ +N
Sbjct: 59 VRVVCARAYHALFMRNMLIRPSREELEHF-HPDYVIYNAGSFPANRFTEGMTSATSVAIN 117
Query: 282 LKRREMVILGTQYAGEMKKGLFSVMHYLMP-KKQILSLHSGCNMGRGGDVAXXXXXXXXX 340
+EMVILGT+YAGEMKKG+F+V++Y MP K +L+LHS N G GDV
Sbjct: 118 FAEKEMVILGTEYAGEMKKGVFTVLYYEMPVKHNVLTLHSSANEGENGDVTVFFGLSGTG 177
Query: 341 XXXXXXDRNRILIGDDEHCWSDNGISNIEGGCYAKCIDLSQEKEPDIWDAIKFGTVLENV 400
D R LIGDDEHCW+D G+ NIEGGCYAKCI LS EKEPDI++AI+FG+VLENV
Sbjct: 178 KTTLSADPKRKLIGDDEHCWTDTGVFNIEGGCYAKCIGLSAEKEPDIFNAIRFGSVLENV 237
Query: 401 VFDEHSREVDYTEKSVTENTRAAYPIEYIANAKIPCVGP-HPKNVILLACDAFGVLPPVS 459
VFD SR VDY + ++TENTR AYPIEYI NAKIPC HP N+ILL CDA GVLPP+S
Sbjct: 238 VFDPVSRVVDYDDSTLTENTRCAYPIEYIDNAKIPCKSENHPTNIILLTCDARGVLPPIS 297
Query: 460 KLSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTRYAAMLADKMNKH 519
KL+ QTM+HFISGYT+ +AGTEDG+ EPQATFS+CF F+ LHP RYA MLA+K+ +H
Sbjct: 298 KLTPEQTMFHFISGYTSKMAGTEDGVTEPQATFSSCFAQPFLALHPMRYAHMLAEKIKEH 357
Query: 520 GATGWLVNTGWIG-GSYGVGERISLAYTRKIIDAIHSGELLARSYKKTDVFGLDIPTKVE 578
A WL+NTGW+G G+ G+R L YTR I+DAIH+G L +Y+ + F L +PT
Sbjct: 358 KANAWLLNTGWVGAGATTGGKRCPLKYTRAILDAIHNGSLANANYEVYETFNLPVPTACP 417
Query: 579 GVPSELLDPINTWEDKDSYKLTLLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAGP 635
GVP ELL+P N+W S+K + KL+ LF NFK +++ + E+ AA P
Sbjct: 418 GVPDELLNPKNSWTASTSFKDEVTKLATLFNENFKKYSD-------EATPEVLAAAP 467
>Os10g0204300 Similar to Phosphoenolpyruvate carboxykinase
Length = 48
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/40 (92%), Positives = 38/40 (95%)
Query: 598 KLTLLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAGPNF 637
KL LLKL+DLFKRNFKVFANYKKGGV DLADEIAAAGPNF
Sbjct: 7 KLILLKLADLFKRNFKVFANYKKGGVRDLADEIAAAGPNF 46
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,927,522
Number of extensions: 917782
Number of successful extensions: 1976
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1969
Number of HSP's successfully gapped: 4
Length of query: 637
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 530
Effective length of database: 11,448,903
Effective search space: 6067918590
Effective search space used: 6067918590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)