BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0204100 Os10g0204100|AK120883
(425 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0204100 Zinc finger, RING-type domain containing protein 606 e-173
Os03g0254900 Zinc finger, RING-type domain containing protein 468 e-132
Os01g0374900 Zinc finger, RING-type domain containing protein 277 1e-74
Os05g0397650 Conserved hypothetical protein 198 8e-51
>Os10g0204100 Zinc finger, RING-type domain containing protein
Length = 425
Score = 606 bits (1563), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/361 (83%), Positives = 300/361 (83%)
Query: 39 EVAPNRYVFAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHHHRGGGXX 98
EVAPNRYVFAAAS DHHHRGGG
Sbjct: 39 EVAPNRYVFAAASPYPPQYPNPNLPQYYPQYGNFYPPPPPSMPGPLPAPYDHHHRGGGPA 98
Query: 99 XXXXXXXXXXXIHAAGEFPPAMLQQHPHYHGWGGNFSYGXXXXXXXXXXXYVEHQKAVTI 158
IHAAGEFPPAMLQQHPHYHGWGGNFSYG YVEHQKAVTI
Sbjct: 99 QPPPPPPPPQPIHAAGEFPPAMLQQHPHYHGWGGNFSYGPPTQPPAPAPPYVEHQKAVTI 158
Query: 159 RNDVNLKKETLRVEPDDECPGRFLITFTFDATVAGSMTVYFFAKEELNCNLTATKEDLLK 218
RNDVNLKKETLRVEPDDECPGRFLITFTFDATVAGSMTVYFFAKEELNCNLTATKEDLLK
Sbjct: 159 RNDVNLKKETLRVEPDDECPGRFLITFTFDATVAGSMTVYFFAKEELNCNLTATKEDLLK 218
Query: 219 PVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAETTFSIGQFSEGE 278
PVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAETTFSIGQFSEGE
Sbjct: 219 PVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAETTFSIGQFSEGE 278
Query: 279 EQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGIGNSVEGDTEGND 338
EQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGIGNSVEGDTEGND
Sbjct: 279 EQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGIGNSVEGDTEGND 338
Query: 339 PGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLLEIKVNNKGE 398
PGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLLEIKVNNKGE
Sbjct: 339 PGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLLEIKVNNKGE 398
Query: 399 E 399
E
Sbjct: 399 E 399
>Os03g0254900 Zinc finger, RING-type domain containing protein
Length = 290
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 216/251 (86%), Positives = 235/251 (93%)
Query: 149 YVEHQKAVTIRNDVNLKKETLRVEPDDECPGRFLITFTFDATVAGSMTVYFFAKEELNCN 208
YVEHQKA+TIRNDVNLKKETLR+EPD+ECPGRFL+ FTFDAT+AGSMTVYFFAKEELNCN
Sbjct: 5 YVEHQKAITIRNDVNLKKETLRIEPDEECPGRFLVAFTFDATLAGSMTVYFFAKEELNCN 64
Query: 209 LTATKEDLLKPVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAETT 268
LTA KEDL+KPVTV+FKEGLGQKFRQPSGTGI+FS+FED+EL K+G+MDVYPLAVKAETT
Sbjct: 65 LTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQGDMDVYPLAVKAETT 124
Query: 269 FSIGQFSEGEEQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGIGN 328
+ Q EGE+QK +TPNSQITQA+FE+KE+GDY VRV QILWVNGTRYELQEIYGIGN
Sbjct: 125 MPVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIYGIGN 184
Query: 329 SVEGDTEGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERL 388
SVEGD + NDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQT RCPICRQPVERL
Sbjct: 185 SVEGDADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPVERL 244
Query: 389 LEIKVNNKGEE 399
LEIKVNNK EE
Sbjct: 245 LEIKVNNKAEE 255
>Os01g0374900 Zinc finger, RING-type domain containing protein
Length = 313
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/250 (56%), Positives = 183/250 (73%), Gaps = 4/250 (1%)
Query: 149 YVEHQKAVTIRNDVNLKKETLRVEPDDECP-GR-FLITFTFDATVAGSMTVYFFAKEELN 206
+VE +AV + VN+K +TLR+ PDD+ GR L+ F+FDA GS+TV FFA+E+
Sbjct: 52 HVERHRAVAVSVGVNVKGDTLRLVPDDDDDDGRSLLLAFSFDADGPGSITVCFFAQED-K 110
Query: 207 CNLTATKEDLLKPVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAE 266
C L KE+LL+PVTV FKEG GQ+F+QPSG+GID S FE++EL GE V+P+A K +
Sbjct: 111 CALKTAKENLLQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEGGVFPVAFKVQ 170
Query: 267 TTFSIGQFSEGEEQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGI 326
S Q SEG + Q+ + A+F +K+N +Y V VV+QILWVNG RY LQEIYGI
Sbjct: 171 MDVSGNQESEGAHETEQS-KYLVKYAIFVKKDNAEYGVHVVQQILWVNGIRYVLQEIYGI 229
Query: 327 GNSVEGDTEGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVE 386
GN+ + + +D GKECV+CLSEPRDT VLPCRHMC+C ECA+VL+YQTN+CPICRQPVE
Sbjct: 230 GNTADKNAHEDDSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVE 289
Query: 387 RLLEIKVNNK 396
L EI+V+NK
Sbjct: 290 GLREIEVDNK 299
>Os05g0397650 Conserved hypothetical protein
Length = 334
Score = 198 bits (503), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 138/219 (63%), Gaps = 16/219 (7%)
Query: 149 YVEHQKAVTIRNDVNLKKETLRVEPDDECPGRFLITFTFDATVAGSMTVYFFAKEELNCN 208
+V+HQ+A ++NDVNL K+T+R+ PD P R L+ FTFDA GS+T+Y+F KE NC
Sbjct: 110 FVDHQQARKVKNDVNLHKDTIRLVPDVTDPDRRLVAFTFDAVTDGSITIYYFGKEGKNCT 169
Query: 209 LTATKEDLLKPVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAETT 268
++ +L P + F++GL QKF Q SG+G+D F EL +V+PL V AE
Sbjct: 170 FSSVYPELQTPTKIPFQKGLAQKFVQTSGSGVDLGFFSLDEL-SNPSGEVFPLVVYAEAC 228
Query: 269 FSIGQFSEGEEQKSQTPNS---QITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYG 325
++S PNS QIT AV E+ N D V+VVKQ+LW +G +YELQEIYG
Sbjct: 229 --------PPPEESHQPNSTRAQITLAVIEKHHN-DLRVKVVKQMLWSDGEKYELQEIYG 279
Query: 326 IGNSVEGDT---EGNDPGKECVICLSEPRDTTVLPCRHM 361
I NS E D + +D GKECVICL+EPRDT V PCRH+
Sbjct: 280 IVNSTEADVPDADDSDMGKECVICLTEPRDTAVFPCRHL 318
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,904,377
Number of extensions: 416556
Number of successful extensions: 981
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 4
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)