Os03g0254900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0254900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.81 | 0.321 | 11.4 | 0.451 | 1.26 | -0.663 | -0.272 | -0.515 | -0.18 | 7.51 | 21.3 | 1367 | -- | -- |
| 46.95 | 0.319 | 11.4 | 0.519 | 1.26 | -0.546 | -0.234 | -- | -0.143 | 7.47 | 22.2 | 1350 | -- | -- |
| 47.02 | 0.319 | 11.4 | 0.447 | 1.26 | -0.663 | -- | -0.51 | -0.181 | 7.52 | 21.36 | 1367 | -- | -- |
| 47.12 | 0.32 | 11.4 | 0.509 | 1.25 | -0.546 | -- | -- | -0.141 | 7.49 | 22.27 | 1325 | -- | -- |
| 91.34 | 0.445 | 11.5 | 0.508 | -- | -0.824 | -- | -0.177 | -0.0917 | -- | 25.88 | 492 | -- | -- |
| 58.3 | 0.358 | 11.4 | 0.322 | 1.25 | -- | -0.25 | -- | -0.325 | 7.61 | -- | -- | -- | -- |
| 58.48 | 0.358 | 11.4 | 0.316 | 1.25 | -- | -- | -- | -0.325 | 7.62 | -- | -- | -- | -- |
| 83.48 | 0.426 | 11.4 | 0.637 | -- | -1.05 | -- | -- | 0.00226 | -- | 25.8 | 555 | -- | -- |
| 53.23 | 0.34 | 11.4 | -- | 1.25 | -0.415 | -- | -- | -0.226 | 7.46 | 22.5 | 1242 | -- | -- |
| 142.59 | 0.558 | 11.4 | 0.333 | -- | -- | -- | -- | -0.306 | -- | -- | -- | -- | -- |
| 61.11 | 0.366 | 11.4 | -- | 1.25 | -- | -- | -- | -0.36 | 7.6 | -- | -- | -- | -- |
| 93.57 | 0.451 | 11.4 | -- | -- | -0.964 | -- | -- | -0.0619 | -- | 25.78 | 534 | -- | -- |
| 145.52 | 0.563 | 11.5 | -- | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 2 | 45.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 3 | 45.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 4 | 45.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 5 | 45.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 9 | 45.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 11 | 45.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 12 | 45.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 19 | 45.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 29 | 45.37 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 38 | 45.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 77 | 45.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 121 | 45.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 138 | 45.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 171 | 45.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 276 | 46.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 401 | 46.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 444 | 46.33 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 501 | 46.41 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 552 | 46.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 555 | 46.50 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 625 | 46.60 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 774 | 46.83 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 788 | 46.84 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 943 | 47.10 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 19 |
| 993 | 47.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |