BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0254900 Os03g0254900|AK072343
(290 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09770.1 | chr3:2996402-2997835 REVERSE LENGTH=389 356 9e-99
AT3G53410.1 | chr3:19801175-19802274 REVERSE LENGTH=300 328 1e-90
AT5G03200.1 | chr5:760450-761667 REVERSE LENGTH=338 303 6e-83
AT5G19080.1 | chr5:6378400-6380287 FORWARD LENGTH=379 252 1e-67
AT3G06140.1 | chr3:1856993-1858777 REVERSE LENGTH=360 249 8e-67
AT2G38185.4 | chr2:16000155-16002699 FORWARD LENGTH=448 50 1e-06
AT3G23280.1 | chr3:8321588-8324109 FORWARD LENGTH=463 50 1e-06
AT2G38195.1 | chr2:16003836-16006261 FORWARD LENGTH=400 50 2e-06
AT4G03000.1 | chr4:1324602-1327348 FORWARD LENGTH=815 49 4e-06
AT2G38220.1 | chr2:16008112-16010538 FORWARD LENGTH=405 49 4e-06
AT1G59560.1 | chr1:21881741-21883632 FORWARD LENGTH=339 49 4e-06
AT2G21380.1 | chr2:9141833-9148883 FORWARD LENGTH=1059 49 4e-06
>AT3G09770.1 | chr3:2996402-2997835 REVERSE LENGTH=389
Length = 388
Score = 356 bits (913), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 177/254 (69%), Positives = 213/254 (83%), Gaps = 8/254 (3%)
Query: 2 PTPYVEHQKAITIRNDVNLKKETLRIEPDEECPGRFLVAFTFDATLAGSMTVYFFAKEEL 61
PTPYVEHQKA+TIRNDVNLKKE+LR+EPD + PGRFLV+FTFDAT++G ++V FFAKE
Sbjct: 120 PTPYVEHQKAVTIRNDVNLKKESLRLEPDPDNPGRFLVSFTFDATVSGRISVIFFAKESE 179
Query: 62 NCNLTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLK-QGDMDVYPLAVK 120
+C LTA KED++ P+T+ F++GLGQKF+Q SG+GI+FSVFED EL K D ++YPLAVK
Sbjct: 180 DCKLTATKEDILPPITLDFEKGLGQKFKQSSGSGIDFSVFEDVELFKAAADTEIYPLAVK 239
Query: 121 AETTMPVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIY 180
AE P + E E+++ + N+QITQA++E K+ G+ ++RV QILWVNGTRYELQEIY
Sbjct: 240 AEAA-PSGGENE-EEERSGSKNAQITQAVYE-KDKGEIKIRVVKQILWVNGTRYELQEIY 296
Query: 181 GIGNSVEG----DADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPI 236
GIGN+VEG DANDPGKECVICLSEPRDTTVLPCRHMCMCS CAKVLR+QT RCPI
Sbjct: 297 GIGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPI 356
Query: 237 CRQPVERLLEIKVN 250
CRQPVERLLEIKV+
Sbjct: 357 CRQPVERLLEIKVH 370
>AT3G53410.1 | chr3:19801175-19802274 REVERSE LENGTH=300
Length = 299
Score = 328 bits (842), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 158/252 (62%), Positives = 191/252 (75%), Gaps = 7/252 (2%)
Query: 2 PTPYVEHQKAITIRNDVNLKKETLRIEPDEECPGRFLVAFTFDATLAGSMTVYFFAKEEL 61
P YVEHQ+A+TIRND+NLKKETLR+EPDE+ PG+FL++FTFDA++ GS+TV FFAKE
Sbjct: 51 PVQYVEHQEAVTIRNDINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSITVMFFAKEGK 110
Query: 62 NCNLTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQGDMDVYPLAVKA 121
+CNL A KEDL VSF +GL Q+F+Q GTGI+FS +++L++ + DVY +AVKA
Sbjct: 111 DCNLIATKEDLFPSTQVSFAKGLEQRFKQACGTGIDFSDMSEADLVEANETDVYHVAVKA 170
Query: 122 ETTMPVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIYG 181
E D G TPN QIT + EK G+Y+ RV QILWVNG RY LQEIYG
Sbjct: 171 EVVSEDDHPESG------TPNRQITHVVLEKDHKGEYKARVVKQILWVNGNRYVLQEIYG 224
Query: 182 IGNSVEGDA-DANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQP 240
IGN+V+ + DAN+ GKECVICLSEPRDTTVLPCRHMCMCS CAK+LR+QT CPICRQP
Sbjct: 225 IGNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQP 284
Query: 241 VERLLEIKVNNK 252
V+RLLEI VNN
Sbjct: 285 VDRLLEITVNNN 296
>AT5G03200.1 | chr5:760450-761667 REVERSE LENGTH=338
Length = 337
Score = 303 bits (776), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 152/250 (60%), Positives = 181/250 (72%), Gaps = 12/250 (4%)
Query: 1 MPTPYVEHQKAITIRNDVNLKKETLRIEPDEECPGRFLVAFTFDATLAGSMTVYFFAKEE 60
+P P HQKA+TIRNDVNLKK+TL + PD E P R LV+FTFDA++ G +TV FFA E+
Sbjct: 99 LPPPTYVHQKAVTIRNDVNLKKKTLTLIPDPENPNRLLVSFTFDASMPGRITVVFFATED 158
Query: 61 LNCNLTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQGDMDVYPLAVK 120
CNL A KED + P+T F EGLGQKF Q SGTGI+ + F+DSEL K+ D DV+PLAVK
Sbjct: 159 AECNLRATKEDTLPPITFDFGEGLGQKFIQSSGTGIDLTAFKDSELFKEVDTDVFPLAVK 218
Query: 121 AETTMPVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIY 180
AE T E+ K + N QITQ ++ KE G+ ++ V QILWVN RYEL EIY
Sbjct: 219 AEAT-------PAEEGKSGSTNVQITQVVY-TKEKGEIKIEVVKQILWVNKRRYELLEIY 270
Query: 181 GIGNSVEGDADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQP 240
GI N+V+G +D GKECV+CLSEPRDTTVLPCRHMCMCS CAK LR+QT CP+CRQP
Sbjct: 271 GIENTVDG----SDEGKECVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQP 326
Query: 241 VERLLEIKVN 250
VE LLEI N
Sbjct: 327 VEMLLEINKN 336
>AT5G19080.1 | chr5:6378400-6380287 FORWARD LENGTH=379
Length = 378
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 168/260 (64%), Gaps = 11/260 (4%)
Query: 2 PTPYVEHQKAITIRNDVNLKKETLRIEPDEECPGRFLVAFTFDATLAGSMTVYFFAKEEL 61
P PYVEHQ A ++NDVN+ K T+R+ D+ PG +LV+F FDA GS T+ FF +EE
Sbjct: 125 PAPYVEHQTAKKVKNDVNVNKATVRLVADDLNPGHYLVSFVFDALFDGSFTIIFFGEEES 184
Query: 62 NCNLTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQGDMDVYPLAVKA 121
C + + P+ V F++G GQKF Q GTGI+ F +L K +VYPL + A
Sbjct: 185 KCTIVPHLPEAFPPIKVPFQKGAGQKFLQAPGTGIDLGFFSLDDLSKPSPEEVYPLVISA 244
Query: 122 ETTM-PVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIY 180
ET + P E K QITQA+ EK G ++V+V QILW+ G RYELQE+Y
Sbjct: 245 ETVISPSSVSEEPLVHK------QITQAVLEKTNDGSFKVKVMKQILWIEGERYELQELY 298
Query: 181 GIGNSV-EGDADA---NDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPI 236
GI NS+ +G A + + GKECVICL+EP+DT V+PCRH+C+CS+CA+ LR+QT +CPI
Sbjct: 299 GIDNSITQGTAASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPI 358
Query: 237 CRQPVERLLEIKVNNKAEEQ 256
CRQP+ L++IKV + E+
Sbjct: 359 CRQPIHELVKIKVESSDEQH 378
>AT3G06140.1 | chr3:1856993-1858777 REVERSE LENGTH=360
Length = 359
Score = 249 bits (637), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 122/255 (47%), Positives = 168/255 (65%), Gaps = 10/255 (3%)
Query: 5 YVEHQKAITIRNDVNLKKETLRIEPDEECPGRFLVAFTFDATLAGSMTVYFFAKEELNCN 64
Y+E Q A +RNDVN+ ++T+R+E D+ PG LV+F FDA GS T+ FFAKEE NC
Sbjct: 112 YLEQQNAKKVRNDVNVHRDTVRLEVDDLVPGHHLVSFVFDALFDGSFTITFFAKEEPNCT 171
Query: 65 LTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQGDMDVYPLAVKAETT 124
+ ++ P F++G GQKF QPSGTG + S F +L K + DVYPL + AET
Sbjct: 172 IIPQFPEVYSPTRFHFQKGPGQKFLQPSGTGTDLSFFVLDDLSKPLEEDVYPLVISAETI 231
Query: 125 MPVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIYGIGN 184
+ + E + + Q+TQA+ EK G ++V+V QILW+ G RYEL+E+Y G+
Sbjct: 232 ISPNSISE-----QSSVHKQVTQAVLEKDNDGSFKVKVVKQILWIEGVRYELRELY--GS 284
Query: 185 SVEGDA---DANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPV 241
+ +G A D + G ECVIC++E +DT VLPCRH+CMCS+CAK LR Q+ +CPICRQP+
Sbjct: 285 TTQGAASGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPI 344
Query: 242 ERLLEIKVNNKAEEQ 256
E LLEIK+N+ E+
Sbjct: 345 EELLEIKMNSSDEQH 359
>AT2G38185.4 | chr2:16000155-16002699 FORWARD LENGTH=448
Length = 447
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 182 IGNSVEGDADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPV 241
+GN +G+A +N + C IC PRD LPC H C EC ++ CPICR+ +
Sbjct: 382 MGN--DGEA-SNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKM 438
Query: 242 ERLLEI 247
+++ I
Sbjct: 439 KKVKRI 444
>AT3G23280.1 | chr3:8321588-8324109 FORWARD LENGTH=463
Length = 462
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 169 VNGTRYELQEIYGIGNSVEGDADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLR 228
++ T +L + S EG+ + C ICL P + +PC H+ C C K ++
Sbjct: 381 IDSTPVDLPSAASLPASTEGERKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIK 440
Query: 229 YQTTRCPICRQPVERLLEI 247
+ CP+CR +++++++
Sbjct: 441 SKNWGCPVCRAKIDQVIKL 459
>AT2G38195.1 | chr2:16003836-16006261 FORWARD LENGTH=400
Length = 399
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 199 CVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPVERLLEI 247
C IC PRD LPC H C +C ++ RCPICR+ + + I
Sbjct: 348 CAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKIMHVKRI 396
>AT4G03000.1 | chr4:1324602-1327348 FORWARD LENGTH=815
Length = 814
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 197 KECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTR-CPICRQPVERLLEIK 248
+ECV+CLSE LPC H +CS+C ++ + CP CR ++R ++ +
Sbjct: 758 RECVMCLSEEMSVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQAR 810
>AT2G38220.1 | chr2:16008112-16010538 FORWARD LENGTH=405
Length = 404
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 199 CVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPVERLLEIK 248
C IC PRD LPC H C +C ++ RCPICR+ +++ +K
Sbjct: 353 CAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRK---KMIHVK 399
>AT1G59560.1 | chr1:21881741-21883632 FORWARD LENGTH=339
Length = 338
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 183 GNSVEGDADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPVE 242
G D D D CV+CL + +T + C HMC C+ C+ LR CP+CR+ ++
Sbjct: 278 GGGTSRDGDTPDL---CVVCLDQKYNTAFVECGHMCCCTPCSLQLR----TCPLCRERIQ 330
Query: 243 RLLEI 247
++L+I
Sbjct: 331 QVLKI 335
>AT2G21380.1 | chr2:9141833-9148883 FORWARD LENGTH=1059
Length = 1058
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 199 CVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPV-ERLL 245
C +C P T +LPCRH C+C C+ + CPICR + +RL
Sbjct: 1011 CKVCFESPTATILLPCRHFCLCKSCS----LACSECPICRTKISDRLF 1054
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,632,344
Number of extensions: 290002
Number of successful extensions: 1100
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 16
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 111 (47.4 bits)