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Os10g0204100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0146) R2 : 0.0253
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.106 (0.0308) R2dN8 : 0.0327 R2N8 : 0.0253
σ : 0.276
deviance : 34.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.4 0.172 12.4 0.589 0.52 -0.0359 -0.0365 1.75 -0.0384 2.79 30.06 1167 -- --
13.5 0.171 12.4 0.268 0.529 0.161 -0.0106 -- -0.0517 2.62 30.53 5669 -- --
13.4 0.171 12.4 0.586 0.52 -0.0339 -- 1.73 -0.0381 2.8 30.05 1163 -- --
13.49 0.171 12.4 0.259 0.53 0.158 -- -- -0.0575 2.71 30.57 5652 -- --
28.62 0.249 12.4 0.606 -- 0.0419 -- 1.89 -0.0124 -- 30.16 1184 -- --
14.85 0.181 12.4 0.308 0.544 -- 0.0339 -- -0.083 2.74 -- -- -- --
14.85 0.18 12.4 0.308 0.544 -- -- -- -0.0832 2.74 -- -- -- --
28.78 0.25 12.4 0.263 -- 0.256 -- -- -0.0214 -- 31.5 1143 -- --
15.21 0.182 12.4 -- 0.531 0.193 -- -- -0.0809 2.7 30.5 5670 -- --
32.04 0.264 12.4 0.331 -- -- -- -- -0.0694 -- -- -- -- --
17.35 0.195 12.5 -- 0.55 -- -- -- -0.118 2.75 -- -- -- --
30.6 0.258 12.4 -- -- 0.287 -- -- -0.03 -- 31.6 1153 -- --
34.92 0.276 12.4 -- -- -- -- -- -0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.83 temperature 30 720 < th dose independent rect. 16 1
6 13.04 temperature 30 720 < th dose independent rect. 15 11
8 13.10 humidity 70 1440 < th dose independent rect. 16 2
9 13.12 temperature 30 720 < th dose independent rect. 16 9
13 13.15 humidity 70 1440 > th dose independent rect. 16 2
14 13.17 temperature 30 720 < th dose independent rect. 15 6
27 13.24 temperature 30 720 < th dose independent rect. 16 16
30 13.27 temperature 30 720 < th dose independent sin 16 NA
32 13.28 temperature 30 720 < th dose independent rect. 16 18
36 13.30 temperature 25 4320 > th dose independent rect. 5 1
40 13.30 humidity 70 720 > th dose independent rect. 16 18
45 13.31 humidity 70 1440 > th dose independent rect. 16 8
59 13.34 temperature 30 720 < th dose dependent rect. 16 3
61 13.35 temperature 30 720 < th dose independent rect. 11 16
64 13.35 temperature 30 720 < th dose dependent rect. 17 1
66 13.36 temperature 25 4320 < th dose independent rect. 5 1
80 13.36 temperature 30 720 < th dose independent rect. 6 22
87 13.40 atmosphere 1000 43200 > th dose independent rect. 22 1
89 13.40 atmosphere 1000 43200 < th dose independent rect. 22 1
96 13.40 atmosphere 1000 43200 < th dose independent rect. 18 6
106 13.41 wind 5 43200 < th dose independent rect. 18 11
121 13.42 temperature 30 10 < th dose dependent rect. 17 11
126 13.43 temperature 10 720 > th dose dependent rect. 12 10
131 13.44 temperature 30 720 < th dose independent rect. 11 8
132 13.44 wind 5 43200 > th dose independent rect. 18 11
133 13.44 temperature 30 720 < th dose independent rect. 1 18
139 13.45 temperature 30 720 < th dose independent sin 12 NA
155 13.45 temperature 25 4320 > th dose dependent rect. 4 2
156 13.46 atmosphere 1005 720 > th dose independent rect. 16 2
251 13.48 temperature 10 720 > th dose dependent rect. 17 7
253 13.49 temperature 30 720 > th dose independent rect. 16 3
269 13.49 temperature 30 720 < th dose independent rect. 6 13
277 13.49 temperature 25 720 > th dose dependent rect. 17 2
279 13.50 humidity 70 720 > th dose independent sin 11 NA
293 13.51 temperature 30 720 > th dose independent sin 13 NA
307 13.51 radiation 10 1440 > th dose independent rect. 16 19
309 13.51 temperature 30 720 < th dose independent rect. 3 23
311 13.51 atmosphere 1000 43200 < th dose dependent rect. 18 1
312 13.51 humidity 80 720 < th dose dependent rect. 17 4
315 13.51 temperature 10 720 > th dose dependent rect. 10 14
318 13.52 temperature 15 1440 > th dose independent rect. 23 1
349 13.52 atmosphere 1005 720 > th dose dependent rect. 16 2
356 13.52 atmosphere 1000 43200 < th dose dependent rect. 15 7
358 13.52 temperature 20 720 < th dose dependent rect. 9 14
361 13.53 humidity 70 1440 > th dose independent sin 13 NA
390 13.53 temperature 10 720 > th dose dependent rect. 12 12
391 13.53 temperature 20 720 < th dose dependent rect. 11 12
394 13.53 temperature 10 720 > th dose dependent rect. 12 14
397 13.54 radiation 40 1440 > th dose independent rect. 14 1
409 13.54 atmosphere 1000 43200 < th dose independent rect. 14 10
413 13.54 atmosphere 1000 43200 < th dose independent rect. 11 14
420 13.54 temperature 10 720 > th dose dependent sin 17 NA
421 13.54 humidity 80 720 < th dose dependent rect. 19 1
432 13.54 wind 3 43200 > th dose dependent rect. 18 11
435 13.55 humidity 50 720 > th dose independent rect. 16 1
437 13.55 wind 5 43200 < th dose independent rect. 19 5
438 13.55 wind 5 43200 > th dose independent rect. 18 6
455 13.55 atmosphere 1000 43200 < th dose independent rect. 18 13
495 13.55 atmosphere 1000 10 > th dose dependent rect. 17 11
504 13.56 atmosphere 1000 43200 < th dose independent sin 13 NA
510 13.56 temperature 30 1440 > th dose independent rect. 11 4
523 13.56 temperature 30 720 < th dose independent rect. 11 12
532 13.56 atmosphere 1000 43200 > th dose independent rect. 18 15
555 13.56 radiation 40 1440 > th dose independent rect. 14 19
581 13.56 temperature 25 720 > th dose dependent rect. 16 13
587 13.57 humidity 70 1440 < th dose independent sin 14 NA
588 13.57 atmosphere 1000 43200 < th dose independent sin 11 NA
604 13.57 atmosphere 1000 43200 > th dose independent rect. 14 10
612 13.57 atmosphere 1000 43200 > th dose independent rect. 11 13
613 13.57 atmosphere 1000 43200 > th dose independent rect. 18 13
690 13.57 temperature 25 720 > th dose dependent rect. 16 11
698 13.58 wind 5 43200 > th dose independent sin 12 NA
699 13.58 wind 5 43200 < th dose independent sin 12 NA
708 13.58 atmosphere 1000 43200 < th dose independent no NA NA
724 13.58 temperature 30 1440 > th dose independent rect. 12 7
833 13.58 atmosphere 1000 43200 < th dose independent rect. 14 18
864 13.58 temperature 30 1440 > th dose independent rect. 18 21
916 13.58 temperature 25 720 > th dose dependent rect. 16 9
924 13.58 temperature 10 720 > th dose dependent rect. 10 12
931 13.58 humidity 80 720 < th dose dependent rect. 16 19
932 13.58 radiation 10 1440 < th dose dependent rect. 15 19
939 13.59 atmosphere 1000 43200 > th dose independent sin 9 NA
950 13.59 wind 9 43200 > th dose independent rect. 17 1
951 13.59 wind 9 43200 < th dose independent rect. 17 1
969 13.59 atmosphere 1000 43200 > th dose independent rect. 21 10
975 13.59 humidity 70 90 > th dose independent rect. 16 11