Os01g0374900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0374900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.16 | 0.189 | 10.4 | -0.214 | 0.55 | 1.11 | -0.13 | -0.97 | -0.124 | 2.24 | 15.8 | 334 | -- | -- |
| 16.76 | 0.191 | 10.4 | -0.0501 | 0.55 | 1.13 | 0.00558 | -- | -0.0772 | 2.25 | 14.98 | 333 | -- | -- |
| 16.21 | 0.188 | 10.4 | -0.196 | 0.549 | 1.11 | -- | -0.886 | -0.12 | 2.29 | 15.87 | 342 | -- | -- |
| 16.76 | 0.191 | 10.4 | -0.0516 | 0.552 | 1.13 | -- | -- | -0.0794 | 2.25 | 14.9 | 333 | -- | -- |
| 21.61 | 0.217 | 10.4 | -0.22 | -- | 1.09 | -- | -0.694 | -0.116 | -- | 11.93 | 911 | -- | -- |
| 30.99 | 0.261 | 10.4 | 0.193 | 0.393 | -- | -0.112 | -- | 0.0867 | 23.8 | -- | -- | -- | -- |
| 31.04 | 0.261 | 10.4 | 0.197 | 0.393 | -- | -- | -- | 0.0872 | 23.8 | -- | -- | -- | -- |
| 22.03 | 0.219 | 10.4 | -0.0892 | -- | 1.08 | -- | -- | -0.0818 | -- | 9.983 | 913 | -- | -- |
| 16.82 | 0.191 | 10.4 | -- | 0.545 | 1.11 | -- | -- | -0.0708 | 2.22 | 14.9 | 333 | -- | -- |
| 40.78 | 0.298 | 10.3 | 0.209 | -- | -- | -- | -- | 0.0923 | -- | -- | -- | -- | -- |
| 32.07 | 0.265 | 10.4 | -- | 0.396 | -- | -- | -- | 0.0652 | 23.9 | -- | -- | -- | -- |
| 22.22 | 0.22 | 10.4 | -- | -- | 1.05 | -- | -- | -0.0669 | -- | 10.35 | 905 | -- | -- |
| 41.93 | 0.302 | 10.4 | -- | -- | -- | -- | -- | 0.0691 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 16.30 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 6 | 16.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 27 | 17.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 34 | 17.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 39 | 17.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 43 | 17.24 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 51 | 17.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 67 | 17.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 75 | 17.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 78 | 17.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 98 | 17.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 113 | 17.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 126 | 17.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 130 | 17.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 144 | 17.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 147 | 17.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 10 |
| 156 | 17.67 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 159 | 17.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 176 | 17.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 214 | 17.72 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 633 | 18.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 763 | 18.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |