BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0374900 Os01g0374900|AK067148
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0374900 Zinc finger, RING-type domain containing protein 538 e-153
Os10g0204100 Zinc finger, RING-type domain containing protein 277 8e-75
Os03g0254900 Zinc finger, RING-type domain containing protein 271 5e-73
Os05g0397650 Conserved hypothetical protein 154 9e-38
>Os01g0374900 Zinc finger, RING-type domain containing protein
Length = 313
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/313 (85%), Positives = 269/313 (85%)
Query: 1 MGNIXXXXXXXXXXXXXHLEAYRHGVXXXXXXXXXXXXXXXXXXXXXXXXXHVERHRAVA 60
MGNI HLEAYRHGV HVERHRAVA
Sbjct: 1 MGNIASSGGASPRPPPPHLEAYRHGVPPPYYHSYPRPPPGAAAPPPVPVPAHVERHRAVA 60
Query: 61 VSVGVNVKGDTLRLVPXXXXXXGRSLLLAFSFDADGPGSITVCFFAQEDKCALKTAKENL 120
VSVGVNVKGDTLRLVP GRSLLLAFSFDADGPGSITVCFFAQEDKCALKTAKENL
Sbjct: 61 VSVGVNVKGDTLRLVPDDDDDDGRSLLLAFSFDADGPGSITVCFFAQEDKCALKTAKENL 120
Query: 121 LQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEGGVFPVAFKVQMDVSGNQESE 180
LQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEGGVFPVAFKVQMDVSGNQESE
Sbjct: 121 LQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEGGVFPVAFKVQMDVSGNQESE 180
Query: 181 GAHETEQSKYLVKYAIFVKKDNAEYGVHVVQQILWVNGIRYVLQEIYGIGNTADKNAHED 240
GAHETEQSKYLVKYAIFVKKDNAEYGVHVVQQILWVNGIRYVLQEIYGIGNTADKNAHED
Sbjct: 181 GAHETEQSKYLVKYAIFVKKDNAEYGVHVVQQILWVNGIRYVLQEIYGIGNTADKNAHED 240
Query: 241 DSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVEGLREIEVDNKP 300
DSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVEGLREIEVDNKP
Sbjct: 241 DSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVEGLREIEVDNKP 300
Query: 301 IPQQGSQQLTAPQ 313
IPQQGSQQLTAPQ
Sbjct: 301 IPQQGSQQLTAPQ 313
>Os10g0204100 Zinc finger, RING-type domain containing protein
Length = 425
Score = 277 bits (708), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 180/250 (72%), Gaps = 4/250 (1%)
Query: 52 HVERHRAVAVSVGVNVKGDTLRLVPXXXXXXGRSLLLAFSFDADGPGSITVCFFAQED-K 110
+VE +AV + VN+K +TLR+ P GR L+ F+FDA GS+TV FFA+E+
Sbjct: 149 YVEHQKAVTIRNDVNLKKETLRVEPDDECP-GR-FLITFTFDATVAGSMTVYFFAKEELN 206
Query: 111 CALKTAKENLLQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEGGVFPVAFKVQ 170
C L KE+LL+PVTV FKEG GQ+F+QPSG+GID S FE++EL GE V+P+A K +
Sbjct: 207 CNLTATKEDLLKPVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAE 266
Query: 171 MDVSGNQESEGAHETEQS-KYLVKYAIFVKKDNAEYGVHVVQQILWVNGIRYVLQEIYGI 229
S Q SEG + Q+ + A+F +K+N +Y V VV+QILWVNG RY LQEIYGI
Sbjct: 267 TTFSIGQFSEGEEQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGI 326
Query: 230 GNTADKNAHEDDSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVE 289
GN+ + + +D GKECV+CLSEPRDT VLPCRHMC+C ECA+VL+YQTN+CPICRQPVE
Sbjct: 327 GNSVEGDTEGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVE 386
Query: 290 GLREIEVDNK 299
L EI+V+NK
Sbjct: 387 RLLEIKVNNK 396
>Os03g0254900 Zinc finger, RING-type domain containing protein
Length = 290
Score = 271 bits (693), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/255 (53%), Positives = 182/255 (71%), Gaps = 4/255 (1%)
Query: 52 HVERHRAVAVSVGVNVKGDTLRLVPXXXXXXGRSLLLAFSFDADGPGSITVCFFAQED-K 110
+VE +A+ + VN+K +TLR+ P GR L+AF+FDA GS+TV FFA+E+
Sbjct: 5 YVEHQKAITIRNDVNLKKETLRIEPDEECP-GR-FLVAFTFDATLAGSMTVYFFAKEELN 62
Query: 111 CALKTAKENLLQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEGGVFPVAFKVQ 170
C L KE+L++PVTV FKEG GQ+F+QPSG+GI+ S FE+SEL G+ V+P+A K +
Sbjct: 63 CNLTAVKEDLIKPVTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQGDMDVYPLAVKAE 122
Query: 171 MDVSGNQESEGAHETEQS-KYLVKYAIFVKKDNAEYGVHVVQQILWVNGIRYVLQEIYGI 229
+ +Q+ EG + ++ + A+F KK++ +Y V V QILWVNG RY LQEIYGI
Sbjct: 123 TTMPVDQKLEGEDQKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIYGI 182
Query: 230 GNTADKNAHEDDSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKYQTNKCPICRQPVE 289
GN+ + +A +D GKECV+CLSEPRDT VLPCRHMC+C ECA+VL+YQT +CPICRQPVE
Sbjct: 183 GNSVEGDADANDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPVE 242
Query: 290 GLREIEVDNKPIPQQ 304
L EI+V+NK QQ
Sbjct: 243 RLLEIKVNNKAEEQQ 257
>Os05g0397650 Conserved hypothetical protein
Length = 334
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 126/220 (57%), Gaps = 12/220 (5%)
Query: 53 VERHRAVAVSVGVNVKGDTLRLVPXXXXXXGRSLLLAFSFDADGPGSITVCFFAQEDK-C 111
V+ +A V VN+ DT+RLVP R L+AF+FDA GSIT+ +F +E K C
Sbjct: 111 VDHQQARKVKNDVNLHKDTIRLVPDVTDPDRR--LVAFTFDAVTDGSITIYYFGKEGKNC 168
Query: 112 ALKTAKENLLQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEGGVFPVAFKVQM 171
+ L P +PF++G Q+F Q SGSG+D+ F EL+N G VFP+ +
Sbjct: 169 TFSSVYPELQTPTKIPFQKGLAQKFVQTSGSGVDLGFFSLDELSN-PSGEVFPLVVYAE- 226
Query: 172 DVSGNQESEGAHETEQSKYLVKYAIFVKKDNAEYGVHVVQQILWVNGIRYVLQEIYGIGN 231
E +H+ ++ + A+ K N + V VV+Q+LW +G +Y LQEIYGI N
Sbjct: 227 ---ACPPPEESHQPNSTRAQITLAVIEKHHN-DLRVKVVKQMLWSDGEKYELQEIYGIVN 282
Query: 232 TAD---KNAHEDDSGKECVVCLSEPRDTAVLPCRHMCLCR 268
+ + +A + D GKECV+CL+EPRDTAV PCRH+ R
Sbjct: 283 STEADVPDADDSDMGKECVICLTEPRDTAVFPCRHLYAAR 322
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,354,311
Number of extensions: 379069
Number of successful extensions: 907
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 4
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)