BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0184300 Os10g0184300|AK058856
         (105 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0184300  ATPase, V0/A0 complex, 116-kDa subunit family ...   208   7e-55
Os03g0251500  Similar to T-cell immune regulator 1 transcrip...   182   4e-47
Os01g0834200  Similar to T-cell immune regulator 1 transcrip...   167   1e-42
AK110505                                                          126   3e-30

>Os10g0184300 ATPase, V0/A0 complex, 116-kDa subunit family protein
          Length = 105

 Score =  208 bits (529), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLFATIGVL 60
           VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLFATIGVL
Sbjct: 1   VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLFATIGVL 60

Query: 61  LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEEED 105
           LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEEED
Sbjct: 61  LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEEED 105



>Os03g0251500 Similar to T-cell immune regulator 1 transcript variant 3
           (Fragment)
          Length = 820

 Score =  182 bits (463), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 96/105 (91%)

Query: 1   VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLFATIGVL 60
           VLGAVSNTASYLRLWALSLAHSELS+VFY+KVL+L++GYNNI I I G  IF+ AT+GVL
Sbjct: 716 VLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAFGYNNILIRIAGITIFICATVGVL 775

Query: 61  LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEEED 105
           LVMETLSAFLHALRLHWVEFQNKFYEGDGYKF PF+FA I EEED
Sbjct: 776 LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFAPFSFALISEEED 820



>Os01g0834200 Similar to T-cell immune regulator 1 transcript variant 3
           (Fragment)
          Length = 818

 Score =  167 bits (424), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 93/105 (88%)

Query: 1   VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLFATIGVL 60
           VLGAVSNTASYLRLWALSLAHSELSTVFYEK+LVL+WGY+N+ + ++G VIF FAT  +L
Sbjct: 714 VLGAVSNTASYLRLWALSLAHSELSTVFYEKLLVLAWGYDNLVVKLVGLVIFSFATAFIL 773

Query: 61  LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEEED 105
           L ME+LSAFLHALRLHWVEF NKFY GDGYKF PF+FA + ++ED
Sbjct: 774 LGMESLSAFLHALRLHWVEFMNKFYHGDGYKFRPFSFALLADDED 818



>AK110505 
          Length = 923

 Score =  126 bits (317), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 4/105 (3%)

Query: 1   VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGY--NNIFILIIGAVIFLFATIG 58
           VLG VSNTASYLRLWALSLAHSEL+ VF+ K L+L +G   N+ F  ++   ++   T G
Sbjct: 820 VLGTVSNTASYLRLWALSLAHSELADVFWTK-LILEYGMYKNSAFFSMVAVAVWFVMTAG 878

Query: 59  VLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEE 103
           VLL M+ L  FLHALRLHWVEFQNKF+  DGY F PF++  ++EE
Sbjct: 879 VLLSMDVLECFLHALRLHWVEFQNKFFHADGYAFKPFSY-DVVEE 922



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.142    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,105,388
Number of extensions: 95685
Number of successful extensions: 290
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 4
Length of query: 105
Length of database: 17,035,801
Length adjustment: 73
Effective length of query: 32
Effective length of database: 13,224,179
Effective search space: 423173728
Effective search space used: 423173728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)