Os03g0251500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to T-cell immune regulator 1 transcript variant 3 (Fragment).
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Os03g0251500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to T-cell immune regulator 1 transcript variant 3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.07 | 0.373 | 12.5 | -0.964 | 1.3 | 0.96 | 1.06 | 0.503 | -0.135 | 8.75 | 81 | 1141 | -- | -- |
| 63.32 | 0.371 | 12.5 | -0.991 | 1.31 | 0.986 | 1.04 | -- | -0.14 | 8.72 | 81 | 1117 | -- | -- |
| 66.62 | 0.38 | 12.5 | -0.953 | 1.31 | 0.97 | -- | 0.204 | -0.154 | 8.74 | 82 | 1124 | -- | -- |
| 66.55 | 0.38 | 12.5 | -0.964 | 1.31 | 0.996 | -- | -- | -0.142 | 8.79 | 81.58 | 1124 | -- | -- |
| 143.54 | 0.558 | 12.5 | -0.878 | -- | 0.805 | -- | 0.285 | -0.148 | -- | 86 | 1427 | -- | -- |
| 83.94 | 0.43 | 12.5 | -0.839 | 1.16 | -- | 0.937 | -- | -0.174 | 8.17 | -- | -- | -- | -- |
| 86.61 | 0.436 | 12.5 | -0.812 | 1.16 | -- | -- | -- | -0.174 | 8.2 | -- | -- | -- | -- |
| 143.53 | 0.558 | 12.6 | -0.908 | -- | 0.842 | -- | -- | -0.149 | -- | 85.94 | 1417 | -- | -- |
| 89.51 | 0.441 | 12.5 | -- | 1.3 | 0.941 | -- | -- | -0.107 | 8.84 | 155.1 | 1126 | -- | -- |
| 160.96 | 0.593 | 12.6 | -0.803 | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
| 103.98 | 0.477 | 12.5 | -- | 1.16 | -- | -- | -- | -0.084 | 8.25 | -- | -- | -- | -- |
| 164.82 | 0.598 | 12.5 | -- | -- | 0.734 | -- | -- | -0.097 | -- | 175.1 | 1414 | -- | -- |
| 177.96 | 0.623 | 12.5 | -- | -- | -- | -- | -- | -0.072 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.98 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 8 |
| 2 | 60.24 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 8 |
| 7 | 61.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 13 | 63.11 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 21 |
| 46 | 65.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 60 | 65.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 78 | 66.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 110 | 66.55 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 17 |
| 119 | 66.64 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 145 | 66.84 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 148 | 66.86 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 179 | 67.12 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 183 | 67.16 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 246 | 67.50 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 268 | 67.61 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 313 | 67.78 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 322 | 67.80 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 337 | 67.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 355 | 67.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 380 | 67.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 386 | 67.91 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 397 | 67.91 | humidity | 80 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 406 | 67.92 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 426 | 67.94 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 432 | 67.94 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 466 | 67.97 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 482 | 67.99 | radiation | 1 | 90 | < th | dose independent | rect. | 7 | 20 |
| 514 | 68.02 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 9 |
| 547 | 68.10 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 12 |
| 553 | 68.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 556 | 68.11 | radiation | 1 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 565 | 68.13 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 586 | 68.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 630 | 68.24 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 636 | 68.25 | humidity | 50 | 720 | > th | dose dependent | sin | 18 | NA |
| 678 | 68.31 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 13 |
| 682 | 68.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 702 | 68.35 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 13 |
| 745 | 68.42 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 17 | 8 |
| 747 | 68.42 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 18 |
| 846 | 68.55 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 877 | 68.61 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 12 |
| 892 | 68.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 894 | 68.63 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 902 | 68.64 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 905 | 68.64 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 11 |
| 994 | 68.78 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 3 |