Os01g0834200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to T-cell immune regulator 1 transcript variant 3 (Fragment).
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Os01g0834200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to T-cell immune regulator 1 transcript variant 3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.94 | 0.289 | 11.4 | 0.595 | 0.298 | -0.608 | -0.496 | 0.385 | 0.285 | 7 | 24.1 | 93 | -- | -- |
| 38.01 | 0.287 | 11.4 | 0.546 | 0.294 | -0.574 | -0.543 | -- | 0.272 | 6.84 | 24.1 | 94 | -- | -- |
| 38.55 | 0.289 | 11.4 | 0.61 | 0.298 | -0.612 | -- | 0.578 | 0.293 | 7.07 | 24.09 | 92 | -- | -- |
| 38.72 | 0.29 | 11.4 | 0.529 | 0.304 | -0.555 | -- | -- | 0.268 | 6.95 | 24.1 | 91 | -- | -- |
| 41.18 | 0.299 | 11.4 | 0.709 | -- | -0.816 | -- | 1.06 | 0.323 | -- | 24.1 | 268 | -- | -- |
| 43.62 | 0.31 | 11.4 | 0.432 | 0.494 | -- | -0.306 | -- | 0.201 | 5.57 | -- | -- | -- | -- |
| 43.85 | 0.31 | 11.4 | 0.431 | 0.492 | -- | -- | -- | 0.202 | 5.52 | -- | -- | -- | -- |
| 41.79 | 0.301 | 11.4 | 0.563 | -- | -0.716 | -- | -- | 0.284 | -- | 24.2 | 274 | -- | -- |
| 45.72 | 0.317 | 11.4 | -- | 0.385 | -0.431 | -- | -- | 0.191 | 6.59 | 24.48 | 90 | -- | -- |
| 56.44 | 0.351 | 11.4 | 0.447 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 48.74 | 0.327 | 11.4 | -- | 0.499 | -- | -- | -- | 0.154 | 5.49 | -- | -- | -- | -- |
| 49.96 | 0.329 | 11.4 | -- | -- | -0.635 | -- | -- | 0.211 | -- | 24.4 | 273 | -- | -- |
| 61.71 | 0.367 | 11.4 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 3 | 35.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 7 | 35.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 10 | 35.99 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 18 | 36.26 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 23 | 36.41 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 29 | 36.48 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 41 | 36.65 | humidity | 80 | 43200 | > th | dose dependent | sin | 15 | NA |
| 51 | 36.78 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 54 | 36.80 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 20 |
| 84 | 36.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 99 | 36.93 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 121 | 36.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 122 | 36.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 17 |
| 123 | 36.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 151 | 37.03 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 154 | 37.05 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 160 | 37.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 165 | 37.07 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 18 |
| 189 | 37.14 | humidity | 70 | 43200 | > th | dose dependent | rect. | 2 | 15 |
| 194 | 37.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 200 | 37.16 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 206 | 37.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 218 | 37.19 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 261 | 37.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 297 | 37.42 | humidity | 80 | 43200 | > th | dose dependent | sin | 5 | NA |
| 302 | 37.43 | humidity | 80 | 43200 | < th | dose independent | sin | 19 | NA |
| 311 | 37.44 | humidity | 80 | 43200 | > th | dose independent | sin | 19 | NA |
| 317 | 37.46 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 322 | 37.47 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 331 | 37.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 349 | 37.52 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 357 | 37.53 | humidity | 70 | 43200 | > th | dose dependent | sin | 3 | NA |
| 397 | 37.59 | humidity | 80 | 43200 | > th | dose independent | sin | 2 | NA |
| 417 | 37.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 429 | 37.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 491 | 37.70 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 539 | 37.77 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 547 | 37.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 562 | 37.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 576 | 37.80 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 578 | 37.81 | humidity | 80 | 43200 | < th | dose independent | sin | 2 | NA |
| 601 | 37.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 605 | 37.84 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 632 | 37.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 638 | 37.86 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 678 | 37.91 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 684 | 37.91 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 720 | 37.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 756 | 37.98 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 801 | 38.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 804 | 38.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 860 | 38.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 879 | 38.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 898 | 38.09 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 926 | 38.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 929 | 38.12 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 958 | 38.14 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 966 | 38.14 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 985 | 38.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 987 | 38.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |