BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0166500 Os10g0166500|Os10g0166500
(534 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0166500 900 0.0
Os08g0493500 255 5e-68
Os11g0504000 Conserved hypothetical protein 205 8e-53
Os11g0485000 Conserved hypothetical protein 203 3e-52
>Os10g0166500
Length = 534
Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/534 (83%), Positives = 444/534 (83%)
Query: 1 MQPIRSLVIPSEDVCCQEEDLQGNLVVDSGNLFDEIIMSTNDSDMWLILMKLKFYKSKAM 60
MQPIRSLVIPSEDVCCQEEDLQGNLVVDSGNLFDEIIMSTNDSDMWLILMKLKFYKSKAM
Sbjct: 1 MQPIRSLVIPSEDVCCQEEDLQGNLVVDSGNLFDEIIMSTNDSDMWLILMKLKFYKSKAM 60
Query: 61 RNLQITLVVMRSMKNQMKVVGRRVLKNKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
RNLQITLVVMRSMKNQMKVVGRRVLKNKL
Sbjct: 61 RNLQITLVVMRSMKNQMKVVGRRVLKNKLMMAMTRTRTMMTRRMEMIQNMMMMIIEFIFF 120
Query: 121 XASLIWMSGRLRHRPQPQXXXXXXXXXXXXXXXXXXXXXXPTNVEDDESNTRARTGCGDR 180
ASLIWMSGRLRHRPQPQ PTNVEDDESNTRARTGCGDR
Sbjct: 121 IASLIWMSGRLRHRPQPQSEGSSRQTGSASSAQAGNGGSSPTNVEDDESNTRARTGCGDR 180
Query: 181 LEEADCPRIVPAGDAFEVYPYISSRRPSTVQGALLRKFYPGAFGLVECRTPALTWRDYKR 240
LEEADCPRIVPAGDAFEVYPYISSRRPSTVQGALLRKFYPGAFGLVECRTPALTWRDYKR
Sbjct: 181 LEEADCPRIVPAGDAFEVYPYISSRRPSTVQGALLRKFYPGAFGLVECRTPALTWRDYKR 240
Query: 241 STNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQQHTKGGQQGLAAAWQ 300
STNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQQHTKGGQQGLAAAWQ
Sbjct: 241 STNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQQHTKGGQQGLAAAWQ 300
Query: 301 HTHRMQQGKNEQLCNQRAEEAWGCLSRGMEREYGPNWQVEKPDLDANVIYNSTGRMPHGR 360
HTHRMQQGKNEQLCNQRAEEAWGCLSRGMEREYGPNWQVEKPDLDANVIYNSTGRMPHGR
Sbjct: 301 HTHRMQQGKNEQLCNQRAEEAWGCLSRGMEREYGPNWQVEKPDLDANVIYNSTGRMPHGR 360
Query: 361 LAIANEAISNKDKDAIKSRKRAVTPPPSRVSAREIYQQKKIKCLERDNASYRGLECVVRA 420
LAIANEAISNKDKDAIKSRKRAVTPPPSRVSAREIYQQKKIKCLERDNASYRGLECVVRA
Sbjct: 361 LAIANEAISNKDKDAIKSRKRAVTPPPSRVSAREIYQQKKIKCLERDNASYRGLECVVRA 420
Query: 421 LAAKGGLDYETLVRQYAPELASSTKDVGSAPDHHEAEYQHDQSDVXXXXXXXXXXXXXXX 480
LAAKGGLDYETLVRQYAPELASSTKDVGSAPDHHEAEYQHDQSDV
Sbjct: 421 LAAKGGLDYETLVRQYAPELASSTKDVGSAPDHHEAEYQHDQSDVDQEGGNDIGEDEGND 480
Query: 481 FDLEEGNEIPEYEDNDFDLXXXXXXXXXXXXXXXXXXXXXMSESDHEDIDLWII 534
FDLEEGNEIPEYEDNDFDL MSESDHEDIDLWII
Sbjct: 481 FDLEEGNEIPEYEDNDFDLGEGNEIPEGEGNGDDTDGDYGMSESDHEDIDLWII 534
>Os08g0493500
Length = 220
Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 128/179 (71%), Positives = 131/179 (73%), Gaps = 37/179 (20%)
Query: 181 LEEADCPRIVPAGDAFEVYPYISSRRPSTVQGALLRKFYPGAFGLVECRTPALTWRDYKR 240
+EEAD PRIV AGDAFEVYP+ISSRRPSTVQGALLR FYP A GL E RTPALTWRDYKR
Sbjct: 1 MEEADRPRIVLAGDAFEVYPHISSRRPSTVQGALLRMFYPSAIGLPEFRTPALTWRDYKR 60
Query: 241 STNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQ--------------- 285
STNERIMSPA+RVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQ
Sbjct: 61 STNERIMSPANRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQMLFEEKKRATNKLYK 120
Query: 286 ----------------------QHTKGGQQGLAAAWQHTHRMQQGKNEQLCNQRAEEAW 322
QH KGGQQGLAAAWQHTH MQQG NEQLCNQR EEAW
Sbjct: 121 KGKVPAEDVDEDGNHWPTVQALQHKKGGQQGLAAAWQHTHEMQQGNNEQLCNQRTEEAW 179
>Os11g0504000 Conserved hypothetical protein
Length = 276
Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 97/105 (92%), Positives = 99/105 (94%)
Query: 181 LEEADCPRIVPAGDAFEVYPYISSRRPSTVQGALLRKFYPGAFGLVECRTPALTWRDYKR 240
+EEAD PRIV AGDAFEVYP+ISSRRPSTVQGALLR FYPGA GL E RTPALTWRDYKR
Sbjct: 1 MEEADRPRIVLAGDAFEVYPHISSRRPSTVQGALLRMFYPGAIGLPEFRTPALTWRDYKR 60
Query: 241 STNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQ 285
STNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQ
Sbjct: 61 STNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQ 105
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 33/37 (89%)
Query: 286 QHTKGGQQGLAAAWQHTHRMQQGKNEQLCNQRAEEAW 322
QH KGGQQGLAAAWQHTH MQQG NEQLCNQR EEAW
Sbjct: 199 QHKKGGQQGLAAAWQHTHEMQQGNNEQLCNQRTEEAW 235
>Os11g0485000 Conserved hypothetical protein
Length = 246
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/105 (89%), Positives = 98/105 (93%)
Query: 181 LEEADCPRIVPAGDAFEVYPYISSRRPSTVQGALLRKFYPGAFGLVECRTPALTWRDYKR 240
+EE D PRIVPAGDAFEVYP+ISSRRPSTVQGALL +FYPGA GL ECRTPALTWRDYKR
Sbjct: 1 MEEDDRPRIVPAGDAFEVYPHISSRRPSTVQGALLHRFYPGAIGLPECRTPALTWRDYKR 60
Query: 241 STNERIMSPADRVLKEFWYCFKCDPTDKVEADKVLEQNFKKKVPQ 285
STNER+MSPADRVLK FWYCFKCDPTDKVEADKVLEQNFKK VPQ
Sbjct: 61 STNERMMSPADRVLKGFWYCFKCDPTDKVEADKVLEQNFKKNVPQ 105
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/33 (96%), Positives = 32/33 (96%)
Query: 290 GGQQGLAAAWQHTHRMQQGKNEQLCNQRAEEAW 322
GGQQGLAAAWQHTHRMQQG NEQLCNQRAEEAW
Sbjct: 184 GGQQGLAAAWQHTHRMQQGNNEQLCNQRAEEAW 216
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,327,773
Number of extensions: 632185
Number of successful extensions: 1356
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1350
Number of HSP's successfully gapped: 6
Length of query: 534
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 428
Effective length of database: 11,501,117
Effective search space: 4922478076
Effective search space used: 4922478076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)