Os11g0504000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0504000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.43 | 0.324 | 3.1 | 0.326 | 0.102 | -3.75 | 0.157 | 37.8 | -0.00327 | 9.39 | 34.39 | 63 | -- | -- |
| 47.05 | 0.322 | 3.13 | 0.0823 | 0.0966 | 2.61 | 0.147 | -- | -0.00301 | 9.47 | 34.39 | 63 | -- | -- |
| 46.44 | 0.317 | 3.11 | 0.231 | 0.101 | -3.79 | -- | 39.3 | -0.0029 | 8.96 | 35.1 | 69 | -- | -- |
| 47.12 | 0.322 | 3.13 | 0.087 | 0.0988 | 2.62 | -- | -- | -0.00321 | 8.84 | 34.39 | 63 | -- | -- |
| 46.99 | 0.319 | 3.11 | 0.246 | -- | -4.47 | -- | 44.1 | -0.00289 | -- | 35.1 | 68 | -- | -- |
| 53.98 | 0.344 | 3.13 | 0.0956 | 0.101 | -- | 0.21 | -- | -0.00971 | 10.6 | -- | -- | -- | -- |
| 54.13 | 0.345 | 3.13 | 0.103 | 0.104 | -- | -- | -- | -0.00966 | 9.82 | -- | -- | -- | -- |
| 47.68 | 0.323 | 3.13 | 0.087 | -- | 2.63 | -- | -- | -0.00246 | -- | 34.39 | 63 | -- | -- |
| 47.32 | 0.322 | 3.13 | -- | 0.099 | 2.64 | -- | -- | -0.0129 | 8.77 | 34.39 | 63 | -- | -- |
| 54.78 | 0.346 | 3.13 | 0.102 | -- | -- | -- | -- | -0.0096 | -- | -- | -- | -- | -- |
| 54.41 | 0.345 | 3.13 | -- | 0.103 | -- | -- | -- | -0.0212 | 9.75 | -- | -- | -- | -- |
| 47.88 | 0.323 | 3.14 | -- | -- | 2.64 | -- | -- | -0.0121 | -- | 34.39 | 63 | -- | -- |
| 55.05 | 0.346 | 3.14 | -- | -- | -- | -- | -- | -0.0209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.59 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 2 | 46.61 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 1 |
| 3 | 46.61 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 4 | 46.61 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 28 | 48.31 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 31 | 48.57 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 10 | 4 |
| 44 | 48.89 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 57 | 48.98 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 84 | 49.34 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 8 | 7 |
| 100 | 49.44 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 22 |
| 119 | 49.62 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 6 |
| 190 | 49.84 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 23 | NA |
| 242 | 50.06 | wind | 3 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 251 | 50.12 | temperature | 15 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 332 | 50.34 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 21 |
| 333 | 50.34 | temperature | 30 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 348 | 50.34 | temperature | 30 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 356 | 50.37 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 2 |
| 357 | 50.37 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 19 |
| 375 | 50.43 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 3 | 10 |
| 377 | 50.43 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 391 | 50.46 | temperature | 30 | 270 | > th | dose dependent | sin | 7 | NA |
| 428 | 50.51 | temperature | 15 | 90 | > th | dose independent | rect. | 15 | 22 |
| 525 | 50.69 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 5 | 4 |
| 528 | 50.69 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 20 |
| 591 | 50.79 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 611 | 50.83 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 22 | 20 |
| 635 | 50.85 | radiation | 20 | 90 | > th | dose independent | rect. | 12 | 21 |
| 697 | 50.92 | wind | 3 | 90 | < th | dose independent | rect. | 12 | 1 |
| 740 | 50.93 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 13 | 14 |
| 750 | 50.94 | humidity | 70 | 10 | < th | dose independent | rect. | 13 | 2 |
| 796 | 50.98 | humidity | 90 | 30 | < th | dose independent | rect. | 13 | 2 |
| 924 | 51.07 | radiation | 30 | 10 | < th | dose independent | sin | 12 | NA |
| 957 | 51.11 | radiation | 40 | 30 | < th | dose independent | rect. | 13 | 2 |
| 971 | 51.11 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 974 | 51.12 | temperature | 30 | 90 | > th | dose dependent | sin | 22 | NA |
| 986 | 51.13 | radiation | 30 | 10 | > th | dose independent | sin | 13 | NA |