Os10g0166500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0166500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.71 | 0.314 | 3.06 | -0.0539 | 0.0824 | 2.54 | 0.0312 | 5.51 | 0.029 | 10.5 | 18 | 1072 | -- | -- |
| 50.94 | 0.332 | 3.01 | 0.0363 | 0.0744 | 0.307 | 0.431 | -- | 0.0758 | 13.6 | 30.21 | 909 | -- | -- |
| 44.52 | 0.311 | 3.06 | -0.0194 | 0.0874 | 2.97 | -- | 6.38 | 0.0353 | 10.8 | 17.5 | 1032 | -- | -- |
| 51.5 | 0.334 | 3.01 | 0.0448 | 0.104 | 0.319 | -- | -- | 0.0758 | 13.8 | 30.77 | 668 | -- | -- |
| 44.86 | 0.312 | 3.08 | -0.025 | -- | 3.51 | -- | 7.53 | 0.0296 | -- | 17.4 | 1048 | -- | -- |
| 52.31 | 0.339 | 3.03 | -0.059 | 0.132 | -- | 0.36 | -- | 0.0169 | 12.3 | -- | -- | -- | -- |
| 52.84 | 0.34 | 3.02 | -0.0456 | 0.133 | -- | -- | -- | 0.0181 | 11.6 | -- | -- | -- | -- |
| 51.87 | 0.335 | 3.01 | 0.0444 | -- | 0.346 | -- | -- | 0.0788 | -- | 30.98 | 935 | -- | -- |
| 51.53 | 0.334 | 3.01 | -- | 0.103 | 0.303 | -- | -- | 0.0694 | 13.8 | 30.83 | 668 | -- | -- |
| 53.94 | 0.343 | 3.03 | -0.0493 | -- | -- | -- | -- | 0.0166 | -- | -- | -- | -- | -- |
| 52.89 | 0.34 | 3.02 | -- | 0.133 | -- | -- | -- | 0.0232 | 11.6 | -- | -- | -- | -- |
| 51.92 | 0.336 | 3.02 | -- | -- | 0.339 | -- | -- | 0.0668 | -- | 34.95 | 939 | -- | -- |
| 54.01 | 0.343 | 3.03 | -- | -- | -- | -- | -- | 0.0221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 5 | 44.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 6 | 45.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 7 | 45.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 10 | 45.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 13 | 45.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 14 | 45.11 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 22 | 45.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 51 | 45.11 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 85 | 45.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 99 | 45.36 | temperature | 20 | 720 | < th | dose dependent | rect. | 6 | 2 |
| 109 | 45.49 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 121 | 45.61 | temperature | 20 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 131 | 45.65 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 135 | 45.69 | temperature | 20 | 1440 | < th | dose dependent | sin | 20 | NA |
| 136 | 45.69 | temperature | 20 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 140 | 45.73 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 142 | 45.74 | humidity | 90 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 146 | 45.79 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 149 | 45.81 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 156 | 45.89 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 173 | 45.98 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 218 | 46.15 | wind | 1 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 279 | 46.50 | wind | 1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 314 | 46.73 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 318 | 46.75 | wind | 1 | 720 | < th | dose independent | rect. | 7 | 1 |
| 322 | 46.77 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 4 |
| 323 | 46.78 | wind | 1 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 341 | 46.90 | wind | 1 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 348 | 46.92 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 386 | 47.03 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 451 | 47.12 | wind | 9 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 497 | 47.19 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 530 | 47.24 | wind | 9 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 547 | 47.26 | wind | 9 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 557 | 47.26 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 570 | 47.27 | temperature | 20 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 606 | 47.28 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 620 | 47.29 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 628 | 47.30 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 685 | 47.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 738 | 47.37 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 747 | 47.38 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 1 |
| 805 | 47.47 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 810 | 47.48 | radiation | 1 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 817 | 47.49 | wind | 9 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 828 | 47.51 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 834 | 47.52 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 886 | 47.59 | wind | 3 | 10 | < th | dose dependent | rect. | 12 | 1 |